Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03058 ATGGTGCACAGTGCATACGATTGCTTAGAACTAGTTCCCAATTTCAACGGCAAGATCGAAGCAATCGAATCCTACGGTTCAAAGCTTCTACTCGGTTGCTCCGATGGATCTCTCCGAATTTACGCGCCGGAAAACGATTCCTCCGATCGTTCTAAACCCTACGTGCTCGAGAAGAACTATACTGGTTTTGCGAAGAAGCCTGTTGTGTCAATGGAAGTTGTGGAATCGAGAGAGCTTCTTTTATCGCTCTCTGAATCCATCTCGTTTCATAGACTCTCGAGTTTGGAAACTATAGCGGTTATCACCAAAGCTAAGGGCGCTAACGTGTTTTGCTGGGATGATCGGAGAGGTTTCCTCTGCTTCGGGAGGCAAAAGCGCGTTTGCATTTTCAGACACGATGGTGGTAGGGGATTTGTGGAGGTGAAAGAGTTTGGTGTGCCGGATGTGGTGAAGTCGATGAGTTGGTGTGGGGAGAATATATGTTTGGGGTTTAGAAGAGAATATGTGATTTTGAATGCTTCAAATGGTGCTTTGTCTGAGGTTTTTACTTCGGGAAGACTAGCACCGCCTTTAGTGGTGCCTCTTCCATCTGGTGAGCTGCTTCTTGGAAAGGAGAACATTGGGGTCTTTGTGGATCAAAATGGGAAACTTATTCCTGAAGGAAGGATTTGTTGGTCAGAGGCACCCTTGGAAGTTGTGATTCAGAAGCCGTATGCTATTGCTTTGCTGCCTAGATTTGTGGAGATAAGATCTCTTCGGCAACCTTATCCATTGATACAAACTATTGTTCTTCGCAACGTTCGTCATATTTGCCAAAGCAGTAACTCTGTGATACTTGCTTTGGATAATTCTATTCAAGGTCTCTTCCCAGTTCCTCTTGGAGCCCAGATTGTCCAACTAACTGCTTCTGGCAATTTTGAAGAGGCATTGTCATTGTGTAAGCTCCTTCCACCAGAAGATTCAAGTCTTCGTGCTGCAAAGGAGGGATCAATTCATATGAGATATGCCCACTATCTTTTTGATAATGGAAGCTATGAGGATGCTATGGAACACTTTCTGGAAGCTCAAGTAGATATAACCTATGTGCTTTCTCTTTATCAATCCATTGTCCTTCCAAAGACAACTATTGTTCATGAGCCAGAGAAGTTGGACATCGAAAGAGATGCTTCCTATCTCTCCAGTGTTTCAGATGATATGGAACCCTCACCATCTGACGAGAATGCAGCGCTAGAATCCAAAAAAACAAACCATAATATGCTCATGGCTCTCATAAAATATTTACAAAAGAAGAGAGGTTATTTCATTGAGAAGGCTACTTCAGAGGGAACTGATGAAGTTGTTTTAGATGCAGTTGGGGATAACTTTGCATCCTACAGTAGGTTTAGAAAAGCAAACAAGGGGCGTGGTAATGTATCAGTTAGTTCTGGAGCTCGGGAGATGGCTTCAATATTGGATACTGCTCTGCTCCAAGCATTGCTTCTTACTGGACAATCTTCAGCAGCTTTAGAATTGCTTAGAGGTGTTAATTACTGTGATATGAAAATATGTGAAGAAATACTTCGAAAAGGCAACCTTAATGTTGCTTTATTAGAACTTTACAAGTGCAAGTCATTGCACCGGCAAGCTCTTGAACTTCTTCACAAGTTGGTGGAAGAGTCAAGATCCAGCCAGTCTGAAATTACACAAAGGTTCAAGCCTGAGGACATTGTTGAGTATCTCAAGCCGCTATGTGGGACAGACCCCATACTTGTTCTGGAGTTCTCAATGCTTGTTCTTGAAAGCTGTCCATCCCAAACTATTGAGCTCTTTCTTTCTGGAAACATACCAGCAGATATGGTGAACTCATATTTGAAGCAGCACTCTCCAAACATGCAAGCTAGGTACTTGGAGCTCATGCTTGCAATGAATGAGAATGCCATATCTGGCAATCTGCAAAATGAAATGGTAAACATCTACCTATCTGAAGTACTTGAGTGGCATGCTGACTTAGATGCTCAACAAAATTGGGACGAGAAAACTTTTACCCCAACTAGAAAAAAGTTACTGTCAGCTTTAGAAGGTATATCCGAATACAATCCAGGGGCTCTGCTGAAACGTCTTCCTCAAGATGCTTTATACGAAGAGCGGGCAATGTTGTTGGGAAAAATGAACCAACATGAACTGGCGTTATCTCTGTATGTGCATAAGCTTCATGTTCCAGAATTGGCATTATCTTATTGTGATCGGGTGTACGAGTCCACGCGTCAGCCATCTGTAAAAAGTTCTAGCAACATATACCTATTGCTAATGCAAATCTATTTGAATCCTCGAAAGACCACAGCAAGCTTTGAAATGAGAATTGCCAATCTATTATCCCCGCAAAATGCAGCGATTTCTAGAGCTAGTGCAACATCTGTAAAAAGCAGAGGAGGCAGAAACTCAAAGAAAATTGCTGAGATTGAGGGTGCAGAGGACACAAAAGTTAGTTTGAGCAGCACTGACAGTAGCAGGAGTGATGATGATACGGATGAAAATGAGGGTGGCTCTACTATCATGCTTGATGAGGTTCTTGATCTGTTGAGCCGCAGGTGGGATAGAATAAATGGAGCTCAGGCCCTTAAACTTTTGCCCAGAGAGACTAAGTTACAGGATTTGCTATCATTTCTTGGGCCTCTTTTAAGAAAATCTAGTGAAATGTACCGTAACTGTTCAGTGATCAGAAGCTTGAGACAGAGCGAGAGCCTTCAGGTGAAAGATGAACTGTATAGTCAAAGGAAAGGAGTTGTGAAGATAACCAGTGATAGCACGTGTTCTCTGTGCAGAAAGAAAATAGGGACTAGTGTTTTTGCCGTCTACCCCAATGGGAGCACTCTCGTGCACTTTGTCTGTTTTAAAGATTCTCAAAATATGAAAGCAGTGAGCAAAGGGTCTCAATTGAGGAAGCGATCAAATTGA 2934 0.4257 MVHSAYDCLELVPNFNGKIEAIESYGSKLLLGCSDGSLRIYAPENDSSDRSKPYVLEKNYTGFAKKPVVSMEVVESRELLLSLSESISFHRLSSLETIAVITKAKGANVFCWDDRRGFLCFGRQKRVCIFRHDGGRGFVEVKEFGVPDVVKSMSWCGENICLGFRREYVILNASNGALSEVFTSGRLAPPLVVPLPSGELLLGKENIGVFVDQNGKLIPEGRICWSEAPLEVVIQKPYAIALLPRFVEIRSLRQPYPLIQTIVLRNVRHICQSSNSVILALDNSIQGLFPVPLGAQIVQLTASGNFEEALSLCKLLPPEDSSLRAAKEGSIHMRYAHYLFDNGSYEDAMEHFLEAQVDITYVLSLYQSIVLPKTTIVHEPEKLDIERDASYLSSVSDDMEPSPSDENAALESKKTNHNMLMALIKYLQKKRGYFIEKATSEGTDEVVLDAVGDNFASYSRFRKANKGRGNVSVSSGAREMASILDTALLQALLLTGQSSAALELLRGVNYCDMKICEEILRKGNLNVALLELYKCKSLHRQALELLHKLVEESRSSQSEITQRFKPEDIVEYLKPLCGTDPILVLEFSMLVLESCPSQTIELFLSGNIPADMVNSYLKQHSPNMQARYLELMLAMNENAISGNLQNEMVNIYLSEVLEWHADLDAQQNWDEKTFTPTRKKLLSALEGISEYNPGALLKRLPQDALYEERAMLLGKMNQHELALSLYVHKLHVPELALSYCDRVYESTRQPSVKSSSNIYLLLMQIYLNPRKTTASFEMRIANLLSPQNAAISRASATSVKSRGGRNSKKIAEIEGAEDTKVSLSSTDSSRSDDDTDENEGGSTIMLDEVLDLLSRRWDRINGAQALKLLPRETKLQDLLSFLGPLLRKSSEMYRNCSVIRSLRQSESLQVKDELYSQRKGVVKITSDSTCSLCRKKIGTSVFAVYPNGSTLVHFVCFKDSQNMKAVSKGSQLRKRSN 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03058 977 Pfam Vacuolar sorting protein 39 domain 1 484 592 IPR019452 -
Vivi2g03058 977 SUPERFAMILY WD40 repeat-like 25 171 IPR036322 GO:0005515
Vivi2g03058 977 PANTHER CNH DOMAIN CONTAINING 2 964 IPR032914 GO:0016192
Vivi2g03058 977 Pfam Region in Clathrin and VPS 612 742 IPR000547 GO:0006886|GO:0016192
Vivi2g03058 977 Pfam Vacuolar sorting protein 39 domain 2 850 958 IPR019453 -
Vivi2g03058 977 MobiDBLite consensus disorder prediction 794 841 - -
Vivi2g03058 977 ProSiteProfiles Citron homology (CNH) domain profile. 16 277 IPR001180 -
Vivi2g03058 977 Pfam CNH domain 26 271 IPR001180 -
Vivi2g03058 977 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 587 774 IPR000547 GO:0006886|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03058 Vivi-Chr2 130325431 130332223 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03058 K20183 - gmx:100805342 1587.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03058 2 130325431 130332223 Vivi2g03058 2 130325431 130332223 ECH