Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02986 ATGTCTGCTGGCAATGGTTCCTTTAAGAAGAAAGCAATGAATGCCTCAAACATTCTTAGGAATTCTTTGGCAAGAAAAGGCAGGCGGAGCAGCAAAGTCATGTCTGTTGAAATTGAGGATGTTCACGATGCTGAGGAGTTGAAAGCTGTTGAAGAGTTCCGTGAAGCTCTTTTAGCGGATGATCTCCTCCCTGCAAAGCATGATGACTATCATATGATGCTTAGATTCCTTAAGGCCAGGAAATTTGAAATTGATAAATCAAAGCTGATGTGGTCTGATATGCTGAAATGGAGGACGGAATTTGGTGCTGACACTATTGGGGAGGAATTTGAATTCAAGGAAATTGATGAAGTATTGAAATATTATCCACATGGACATCATGGAGTAGACAAAGAAGGACGACCTGTGTACATAGAAAGATTAGGACAAGTCGATGCTGCCAAGATGATGCAAGTCACAACCATGGATCGCTATATCAAATACCACGTAAAGGAGTTTGAGAGGACATTCGATGTAAAGTTTGCAGCTTGTTCCATTGCTGCCAAGAAACACATCGATCAAAGTACGACTATCCTGGATGTGGAGGGAGTGGGGCTTAAAAGCTTCAACAAACATGCTAGGGAACTTGTTACTCGCATTCAGAAGATTGATGGTGACAACTATCCAGAGACCTTGAATCGCATGTTCATCATCAATGCAGGTTCTGGATTTAGAATACTATGGAACACCGTAAAATCCTTCCTTGATCCCAAGACCACAGCAAAAATCCATGTTCTTGGCAACAAGTATGATACTAAGTTGCTTGAATCAATTGATGCAAGTGAGTTGCCTGAGTTTTTGGGAGGTACATGTACATGTGCTGATCAAGGAGGATGTATGCGTTCGGATAAGGGACCGTGGACAGATGCAGATATAATAAAGATGGTTCAGAATGGTGTTCACAAATGTTCAAGAAAATCTGAGTCTCATGTTGAGGAAGAGAACCCAATTCCTGAGGAGGACCACAAGGATTCTAAGTTGGAGGAAAATCTCACCTCACAGCTTCCTCCAATTTCTGAAGAGGTCCCTGCTACTAAAGTTTCCAAGCAAGAGGATTCAATCCCCGTGGATGATAAGAAAACTGCTCAGAAAAAAGTTGACTTAATCCCCGCGCATGATAAAAAACCTTCTCAGAAAAAAGTTGACGAGAGTGACCCCATGGCAACATCAACAGAGTTTATGACTGTCATGAAACGCATGACTGAGTTGGAACAGAAAATGACAAACATTAATCATCAGCCAGCTCTAATGCCACCTGAGAAGGAGGAAATGCTAAATAATACTATTAGTCGAGCTGATTTATTGGAAAAACAACTCATGGACACCAAGAAGGCTTTAGAGGATTCACTGGCTAAGCAAGAGGAGATTTCGGCTTATGTTGAGAGCAAAAAGCAGAATAAAAGAACATGTTTTTGTTTCTGGTAA 1464 0.4126 MSAGNGSFKKKAMNASNILRNSLARKGRRSSKVMSVEIEDVHDAEELKAVEEFREALLADDLLPAKHDDYHMMLRFLKARKFEIDKSKLMWSDMLKWRTEFGADTIGEEFEFKEIDEVLKYYPHGHHGVDKEGRPVYIERLGQVDAAKMMQVTTMDRYIKYHVKEFERTFDVKFAACSIAAKKHIDQSTTILDVEGVGLKSFNKHARELVTRIQKIDGDNYPETLNRMFIINAGSGFRILWNTVKSFLDPKTTAKIHVLGNKYDTKLLESIDASELPEFLGGTCTCADQGGCMRSDKGPWTDADIIKMVQNGVHKCSRKSESHVEEENPIPEEDHKDSKLEENLTSQLPPISEEVPATKVSKQEDSIPVDDKKTAQKKVDLIPAHDKKPSQKKVDESDPMATSTEFMTVMKRMTELEQKMTNINHQPALMPPEKEEMLNNTISRADLLEKQLMDTKKALEDSLAKQEEISAYVESKKQNKRTCFCFW 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02986 487 CDD SEC14 115 283 IPR001251 -
Vivi2g02986 487 Coils Coil 445 469 - -
Vivi2g02986 487 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 114 288 IPR001251 -
Vivi2g02986 487 SUPERFAMILY CRAL/TRIO domain 114 310 IPR036865 -
Vivi2g02986 487 MobiDBLite consensus disorder prediction 316 342 - -
Vivi2g02986 487 Gene3D - 28 101 - -
Vivi2g02986 487 FunFam SEC14 cytosolic factor 102 314 - -
Vivi2g02986 487 MobiDBLite consensus disorder prediction 358 399 - -
Vivi2g02986 487 SMART sec14_4 114 285 IPR001251 -
Vivi2g02986 487 Pfam CRAL/TRIO domain 120 282 IPR001251 -
Vivi2g02986 487 Gene3D - 102 314 IPR036865 -
Vivi2g02986 487 MobiDBLite consensus disorder prediction 316 400 - -
Vivi2g02986 487 PRINTS Cellular retinaldehyde-binding protein signature 72 94 - -
Vivi2g02986 487 PRINTS Cellular retinaldehyde-binding protein signature 241 260 - -
Vivi2g02986 487 PRINTS Cellular retinaldehyde-binding protein signature 274 283 - -
Vivi2g02986 487 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 6 477 - -
Vivi2g02986 487 SMART CRAL_TRIO_N_2 69 94 IPR011074 -
Vivi2g02986 487 SUPERFAMILY CRAL/TRIO N-terminal domain 43 109 IPR036273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02986 Vivi-Chr2 128674945 128679342 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02986 48 279 Acyl Lipid Metabolism Gene Families AT5G47730 28.216 1.18e-18 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02986 K26544 - gmx:100527533 741.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g02986 2 128674945 128679342 Vivi2g02986 2 128674945 128679342 ECH