Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02968 ATGATGGCTTCCGCTTTATCCGCTATCATCAACCAACCTCACACTGCTCAACGCTTCAAGCTTCATTCTCCATCTTCGTTCACCACTCTCACATTCTTCAAACACAAATTCAAACCTTCATCTCCGCGTCCTCTTCATCTCATCACTACTTCTAGAACTTTCTCAGTTTCCAACAAATCGGAAGAACCCTCGCTTCGTCACTTCATCGCTCGAGCTTCTCTCACCGCTTCTCAACTTCAACCACATGTTGTGGCGGATACTGAAGTATCTTCAACTGGTAGAATCTATCATGAGACCTATGGATGTCAAATGAATGTTAATGATATGGAGATTGTTCTATCTATAATGCAAAATGCTGGCTATAATGAAATTGTGACTGTTCCGGAGAATGCGGAGATAATATTCATTAACACTTGTGCTATAAGAGAAAATGCAGAACTCAAAGTGTGGCAGAGGCTTAATTACTTTTGGTTTCTTAAGAGGAATTGGAAGGCCAATGTTGCTACGGGGAGGTCGCAGTCTTTGCGTCCTCCGAAGGTGGTTGTTTTGGGATGTATGGCAGAGAGGTTAAAGGAGAAGATACTTGATGCGGATAAAATGGTTGATGTTGTATGCGGGCCGGATGCGTATAGGGATTTGCCGAGGTTGTTGGAGGAAGTTGAGTATGGACAGAAAGGGATTAATACTCTTCTTTCGCTTGAGGAGACTTATGCTGATATTAATCCGGTTAGGGTTTCTAAGAATTCGATTAGTGCTTTTGTTTCGATTATGAGGGGGTGTAACAATATGTGTTCATTTTGTATTGTACCTTTTACGAGAGGCAGAGAGCGGTCACGTCCTGTGGATTCCATTGTGAGAGAGGTGGCGGAGCTTTGGAAAGAGGGTGTGAAAGAAGTGACGCTTCTTGGGCAGAATGTGAACAGCTATAATGATGCATCTGTGGTTGAAAAAGAGGCTGAATCAGGGTCTAATTGGAAACTTAGTGAAGGATTTTCCAGCATATCGAAAGTCAGAACCACAGGCTTAAGGTTTGCTGATCTGTTGGATAGACTCTCGTTGGAATTTCCTGAAATGCGATTCAGATTCACATCTCCGCACCCTAAAGATTTTCCGGATGAACTGCTTTATCTGATGCGTGAAAGACATAATATATGCAAATTGATACATTTACCTGCACAATCAGGAAGTAGCAAAATGATTGAGAGAATGAGGCGTGGATATACTCGAGAGGCTTACTTGAGTCTCGTGCAAAAAATTCGAAATATTATTCCAGATGTGGCCCTGAGTAGTGATTTCATTTGTGGTTTTTGTGGAGAAACAGAGGAGGATCATTCTGACACATTGAGTCTTGTAAAAGAAGTTGGTTATGATATGGCATACATGTTTGCTTATAGTATGAGAGAGAAAACTCATGCCCACAGAAACTATGTCAATGATGTTCCCGAGGAAACTAAGCAGAGGAGGCTAACTGAACTTATTGAGACTTTCCGTGAGAGCACAGGAAAGTGTTACGACGAGCAGGTTGGAACTACACAGCTTGTGTTAGTTGAAGGACCGAACAAAAGAGCTCCAGATACTGAACTTATAGGTAAGAGTGACAAGGGCCATCGGGTATTATTTGTCAATCTGCCAATCTCAGACAGGGAAGATGTTAATACAAAGAGAAATCCTGTGGTTGGCGATTATGTTGAAGTCCGGATAACAAGATCTTCAAGGGCATCGCTCTTTGGCGATGCACTTGCTATTACTAAATTGAGTTCATTTTACAATAATCTGGAAAAAGAAGCTGTTGCCTGCAGCATGTAA 1806 0.4192 MMASALSAIINQPHTAQRFKLHSPSSFTTLTFFKHKFKPSSPRPLHLITTSRTFSVSNKSEEPSLRHFIARASLTASQLQPHVVADTEVSSTGRIYHETYGCQMNVNDMEIVLSIMQNAGYNEIVTVPENAEIIFINTCAIRENAELKVWQRLNYFWFLKRNWKANVATGRSQSLRPPKVVVLGCMAERLKEKILDADKMVDVVCGPDAYRDLPRLLEEVEYGQKGINTLLSLEETYADINPVRVSKNSISAFVSIMRGCNNMCSFCIVPFTRGRERSRPVDSIVREVAELWKEGVKEVTLLGQNVNSYNDASVVEKEAESGSNWKLSEGFSSISKVRTTGLRFADLLDRLSLEFPEMRFRFTSPHPKDFPDELLYLMRERHNICKLIHLPAQSGSSKMIERMRRGYTREAYLSLVQKIRNIIPDVALSSDFICGFCGETEEDHSDTLSLVKEVGYDMAYMFAYSMREKTHAHRNYVNDVPEETKQRRLTELIETFRESTGKCYDEQVGTTQLVLVEGPNKRAPDTELIGKSDKGHRVLFVNLPISDREDVNTKRNPVVGDYVEVRITRSSRASLFGDALAITKLSSFYNNLEKEAVACSM 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02968 601 Pfam Radical SAM superfamily 254 451 IPR007197 GO:0003824|GO:0051536
Vivi2g02968 601 ProSiteProfiles Methylthiotransferase N-terminal domain profile. 93 222 IPR013848 GO:0035596|GO:0051539
Vivi2g02968 601 CDD Radical_SAM 254 483 - -
Vivi2g02968 601 Pfam Uncharacterized protein family UPF0004 94 206 IPR013848 GO:0035596|GO:0051539
Vivi2g02968 601 SFLD (dimethylallyl)adenosine tRNA methylthiotransferase (MiaB-like) 91 581 IPR006463 GO:0006400|GO:0016740|GO:0051539
Vivi2g02968 601 SUPERFAMILY Radical SAM enzymes 244 498 - -
Vivi2g02968 601 SFLD B12-binding domain containing 155 466 - -
Vivi2g02968 601 SFLD Radical SAM 91 585 IPR007197 GO:0003824|GO:0051536
Vivi2g02968 601 Gene3D tm_1862 like domain 248 507 IPR023404 -
Vivi2g02968 601 FunFam CDK5 regulatory subunit-associated protein 1 248 507 - -
Vivi2g02968 601 ProSitePatterns Methylthiotransferase radical SAM domain signature. 254 274 IPR020612 GO:0051539
Vivi2g02968 601 SFLD CDK5RAP1 91 585 - -
Vivi2g02968 601 ProSiteProfiles Radical SAM core domain profile. 246 502 IPR007197 GO:0003824|GO:0051536
Vivi2g02968 601 FunFam CDK5 regulatory subunit-associated protein 1 93 236 - -
Vivi2g02968 601 ProSiteProfiles TRAM domain profile. 505 581 IPR002792 -
Vivi2g02968 601 SMART MiaB 250 491 IPR006638 GO:0003824|GO:0051536
Vivi2g02968 601 NCBIfam MiaB/RimO family radical SAM methylthiotransferase 94 576 IPR005839 GO:0006400|GO:0016740|GO:0051539
Vivi2g02968 601 Gene3D - 94 236 IPR038135 -
Vivi2g02968 601 Pfam TRAM domain 506 580 IPR002792 -
Vivi2g02968 601 NCBIfam tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 95 578 - -
Vivi2g02968 601 PANTHER CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 1 20 594 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02968 - - vvo:131652054 1192.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g02968 2 128223334 128229449 Vivi2g02968 2 128223334 128229449 ECH