Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02964 ATGAGTTCTCTAAAATTGTTTCTATTTTCATTCTTTTTAGTTTTTTCGGCAACAGAATCAAAAACGCATTGGGAAGACACAGAAGCTCTAAAACAACTCAAACACAACATAAACCTTAATTCACTGAACCCAGGCTCATGCGTGAGTACCTGGGACTTCACCTACGACCCATGCGAAAATCTCTTCAGCGAGAAATTCACCTGCGGATTCAGATGCGACGTCGTCGTTTCACAGCTGAGTCGAGTCACCGAACTCAGCCTCGACCAAGCTGGTTACTCCGGTTCACTCTCTTCCATCGCTTGGGGAAATCTCCCCTATCTCGAAACTCTCGATTTATCAAACAACTACTTCACAGGTTCCATTCCAGATTCTCTCTCAAACTTAACTCGTCTGAGTCGACTCAGTCTATCATCCAACTCGTTCACCGGGGAAATACCATCCTCCATCGGAACATCTCTTGTAAACCTCCAAGAGCTTTACCTCGACAACAACAATCTCCAAGGAACCATCCCTTCGAGTTTCAACAATCTTAAAAGCTTAACCAGGCTCGAACTTCAACGCAACAAGCTCACCGGAAAAATCACTGATTTGAGCTCTTTGGTGAACCTCTACCACATGGATCTCAGTGACAATGGCTTCTCCGACAACCCATTTTCCTTCCCGGTTTCTTTAGTTCAGATTTCAATCCGGAACAACAACATAAGCGGTGGTTTAGCCTCAGAAGCCTTCAAGAACTTGATGTATTTACAAGTACTTGATTTCACCTCCAACAAAATCAACGGCTATGTACCTTCTATATTCTTCCAGCTTCCATCTTTACAACAGTTAACACTTTCATTCAACGAGTTTTCCTCCATTGAAGCTCCATCATTCGGAACAGTAACACAGTCACTACAAAGCGAACTCATAGCAGTTGATTTGAGTAACAATCAGCTTCAAGGCTTTTTACCTTCGTTTCTAGCTTTTTTGCCTAGGCTATCTTCTCTGTCTTTGGAGAATAACCGGTTCACCGGTTTGATACCGGTTCAGTTTGCATTAAAGACGGTTTTTCCTGGAACCGGAGTGGCTCCGTTTGGGAGGCTGTTGTTAGGGGGGAACTATTTGTTGGGAGGGATACCTCGTCCTTTGTTGGTGCTTAAACAAGATTCTGCTAATGTGAGTTTAGTTGATAATTGTTTGTTTAGGTGTCCTCATGTTTTCTTTTTTTGTCAAGGGGGGCAACAGAAATCGTCCTCGGAATGTAGTCGTGTGATTATTCCTTAA 1263 0.4307 MSSLKLFLFSFFLVFSATESKTHWEDTEALKQLKHNINLNSLNPGSCVSTWDFTYDPCENLFSEKFTCGFRCDVVVSQLSRVTELSLDQAGYSGSLSSIAWGNLPYLETLDLSNNYFTGSIPDSLSNLTRLSRLSLSSNSFTGEIPSSIGTSLVNLQELYLDNNNLQGTIPSSFNNLKSLTRLELQRNKLTGKITDLSSLVNLYHMDLSDNGFSDNPFSFPVSLVQISIRNNNISGGLASEAFKNLMYLQVLDFTSNKINGYVPSIFFQLPSLQQLTLSFNEFSSIEAPSFGTVTQSLQSELIAVDLSNNQLQGFLPSFLAFLPRLSSLSLENNRFTGLIPVQFALKTVFPGTGVAPFGRLLLGGNYLLGGIPRPLLVLKQDSANVSLVDNCLFRCPHVFFFCQGGQQKSSSECSRVIIP 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02964 420 SUPERFAMILY L domain-like 67 377 - -
Vivi2g02964 420 SMART LRR_typ_2 153 176 IPR003591 -
Vivi2g02964 420 SMART LRR_typ_2 128 152 IPR003591 -
Vivi2g02964 420 SMART LRR_typ_2 177 200 IPR003591 -
Vivi2g02964 420 SMART LRR_typ_2 104 127 IPR003591 -
Vivi2g02964 420 SMART LRR_typ_2 323 346 IPR003591 -
Vivi2g02964 420 SMART LRR_typ_2 270 293 IPR003591 -
Vivi2g02964 420 FunFam Nuclear pore complex protein NUP107 23 196 - -
Vivi2g02964 420 Gene3D Ribonuclease Inhibitor 24 195 IPR032675 -
Vivi2g02964 420 Gene3D Ribonuclease Inhibitor 196 412 IPR032675 -
Vivi2g02964 420 ProSiteProfiles Leucine-rich repeat profile. 106 129 IPR001611 GO:0005515
Vivi2g02964 420 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 14 415 - -
Vivi2g02964 420 Pfam Leucine rich repeat 224 282 IPR001611 GO:0005515
Vivi2g02964 420 Pfam Leucine rich repeat 81 140 IPR001611 GO:0005515
Vivi2g02964 420 Pfam Leucine rich repeat 155 212 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02964 Vivi-Chr2 128082988 128084469 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02964 79 377 Receptor kinase-like Gene Family AT3G11080 30.966 1.85e-19 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02964 - - gmx:100811366 538.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g02964 2 128082988 128084469 Vivi2g02964 2 128082988 128084469 ECH