Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02686 ATGGAAGCCATCGCCGCTCCACCGCCGCCAACAGCACCCACCCGCCGCAATGCAGACACAACTTCAACCACCACTCCTTCTTCCAAACCCCAACTTCACCTTCGAATACCCCTCCGCAACTCCAAACCCAAAAGCCTCTCTCTCCTACACAACTTCCCTCACCACCCCTCTTCACAACCTCTTCCTCCTCCAAGTAACAAAAAGGAAAAGAAGAACAAGAGAAAAAAATCTGCTTCAACTTCACACATTTTGCCTTTAATGGACGCTCTTCACTTTCCCATACCCGTTGACTTATACACCTCTTTGGTCAAAGAATGCACTCTTTCTGGTAACCCAGAAACCGCAATTGAGTTGCATACTCACATAGCAAGGAGTGGGATCGAACCTCCATTACCATTGATCAATCGGATTCTCATCATGTTTGTTTCTTGCGGTTTGTTCGACAATGCACGCCATGTGTTTGACTCAATGCTTGTGAGGGATTTTCATTCCTGGGCAATTTTGTTTGTTGCATATTATGAAAATTCTGATTATGAGAATGCTACGGATGTTTTTCTTGGCATGTTATGTCAATTGGGTGTGACGGAGTTTACTTTTCCTCCATGGATTTGGTCTTGTCTTCTCACGGCTTGTGCCTGCACTATGAATGTTCCTCTAGGAATGCAGGTTCATGGATGTTTATTAAAGTTGGGTGCTTGTGACCATGTACTTATAAGTAGCTCTTTGATTAGATTTTATGGGAGATTTAAGTGTCTGGAAGATGCAAACGTTGTTTTTAATAAAGTGTCGCGGCATAACACGTTGACTTGGACTGCTAAAATTGTTAGTGGTTGTAAAGAAAGGCATTTCTCTGAGGCTCTTGCTGATTTCAAGGAAATGGGAAGGGTAGGGATAAAGAAGGACAGTTTTACATTTTCCAGTGTTCTCAAGGCTTGTGGAAGGATGCGGAATCATGGAAGCTGCGGCGAACAGGTTCATGCTGATACCATCAAACTAGGACTTGACTCAGATAACTATGTGCAGTGTAGTTTGGTAGCCATGTATGGAAGAAGTGGGTTAATAAGAGATGCAAAACTGGTGTTTGAAACGACCCGAAATGAAAGAAATGTCGATAGTTGGAATGCCATGCTTATGTGTTACATACAGAATGGTTTGTACATTGAAGCTGTCAAGTTTGTGTATCGGATGAAAGCTGCTGGAGTGTATCCACATGAGTCACTGCTTGATAAACTAAGAATTGCTTGTGGCAGTTCTACATTTTAA 1263 0.4276 MEAIAAPPPPTAPTRRNADTTSTTTPSSKPQLHLRIPLRNSKPKSLSLLHNFPHHPSSQPLPPPSNKKEKKNKRKKSASTSHILPLMDALHFPIPVDLYTSLVKECTLSGNPETAIELHTHIARSGIEPPLPLINRILIMFVSCGLFDNARHVFDSMLVRDFHSWAILFVAYYENSDYENATDVFLGMLCQLGVTEFTFPPWIWSCLLTACACTMNVPLGMQVHGCLLKLGACDHVLISSSLIRFYGRFKCLEDANVVFNKVSRHNTLTWTAKIVSGCKERHFSEALADFKEMGRVGIKKDSFTFSSVLKACGRMRNHGSCGEQVHADTIKLGLDSDNYVQCSLVAMYGRSGLIRDAKLVFETTRNERNVDSWNAMLMCYIQNGLYIEAVKFVYRMKAAGVYPHESLLDKLRIACGSSTF 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02686 420 Pfam PPR repeat 372 401 IPR002885 -
Vivi2g02686 420 Gene3D Tetratricopeptide repeat domain 71 208 IPR011990 GO:0005515
Vivi2g02686 420 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 403 IPR002885 -
Vivi2g02686 420 MobiDBLite consensus disorder prediction 15 31 - -
Vivi2g02686 420 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 21 415 IPR046960 GO:0003723|GO:0009451
Vivi2g02686 420 MobiDBLite consensus disorder prediction 1 80 - -
Vivi2g02686 420 Gene3D Tetratricopeptide repeat domain 209 325 IPR011990 GO:0005515
Vivi2g02686 420 Gene3D Tetratricopeptide repeat domain 326 418 IPR011990 GO:0005515
Vivi2g02686 420 NCBIfam pentatricopeptide repeat 372 403 IPR002885 -
Vivi2g02686 420 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 95 129 IPR002885 -
Vivi2g02686 420 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 321 420 - -
Vivi2g02686 420 Pfam PPR repeat family 266 312 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02686 Vivi-Chr2 120296033 120297749 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02686 286 420 Glycoside Hydrolase AT3G49170 36.957 1.98e-17 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02686 - - tpra:123907457 671.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g02686 2 120296033 120297749 Vivi2g02686 2 120296033 120297749 ECH