Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g02406 ATGGCGGTGAAATGCTTGCTCCGCAGCAGAGTTCACTTCCAACAACCACGTTTCTTCAGATTCTATTCTCCATATTCTTCCGCATTGATGTTGGATGATGAAACTCCAAATTTCAATGTTCCAGTTCCTAAAACCCCGGCGAAATTATCTCGTTTGGTTGTTAAGGTATTCAAGTCCTTAAATTGGGGGGTTGCAAGGGAAGTAAAGTTCAAAGGTTTGGTTCAAAGGCATGGTTTTTATCATTCAATCAATTCCTTTAGAATCATCATTCACACTTATGCTTTGGCTGGTATGAGTTTGGAAGTGTTTATTTTGCTTAGAGATATTGTTGAATACTATAAAGAGCAAAATCGAGACGCGTTTGAATTGTTTTCGGTTTTGATTGATTCACCACACCATGTGAAAATGAAAAGGTCTGTTGTTGTGTTTGATATGCTTATGAAAGTTTTTGCTTCAAACTCTATGCTTGAACATGCCTATTACGTGTTTGTTAATGCTAGGGAGGTTGGGATTCAGCCGAATATAATGTCGTGTAATTTCTTGTTGAAATGTTTGGTAGAAGCAAATAGAGTGGATGGTGTGAGATGTTTCTTTGAAGATTTGAGAAAGTTTGGTCCGAAGATGAATATCCATACTTATACAATCATGATGAACTTTTATTGTAGAGATGTTGGGTGCAGTGTTGATATTAGGCGGGCTTCTGAGATTTTAGGGAAGATATATAGGAGTGGGGAAACCCCGACTGTTGTTACGTATAGTACTTATATTAAGGGACTTTGTAAAGTTGGTTCCGTTGAGGTTGCGTTGAAGTTGATTTGTGACTTGCACCGAAAAAACCAGCCTCTCAATAGCCATTGTTTTAATGCTGTAATATATGGATTGTGTCAAAGACGTGCTGTAGATGAAGCTTCACTAGTTTTGGAAGAAATGAAAAACTCTGTAATACTGCCCGATGTTTATAGTTATAGCATTTTAGTTGATGCATTTTGCAAGAATGGAGATGATAAGAGAGCTATTGACTTGATGACAGATATGAAACTCTACGGAATAAAACCATCCATTGTTAGCTATACTTCTCTCATTCGCGGTCTATGCAAGAATAGGCCGATGCAAAGCTTGATGAATATCTTCCATGAAATCGGTGCTTCAGGTTGCAAATATGATCAGATTATGTATGAAACTTTAGTTGATGGGTTTTGCAGGAAAGGTGATATGCGTTCAGCCATCCATCTTCTGGAGGAGATGGGTGACAATAATTTTGCTCCCTCTGCTTTTAGTTATTGCAGTCTAATTAGGGGGTTCTACAAATTGAGACAATTCACTAACGCGTTGAAAATTTATGGTATCATGCAAAAAAGGGGTTTCTGGCCGGATACAATCACTTGCAATCATGTTCTTAGTATTTACTGCAGGAAACGTGAATTCAATGAAGCCTTGGCATTGTCGGAGAAATTCCAAGAACACGGAGTTAACCTCAACCCATATTCATATAATGAATTCATCCACAAGCTTTGTAGAGAAAGTTTTCCAGAAAAGGCACTGCAGCTTCTGCCACTAATGCTTAAAAATAATGTACTTCCTGGAGTTGTTAATTATAGTACGCTTATAACTGGCTTTGTCAAACATTCAAATTCTAAAAAGGCCGTGGTGTTATTCACTAGAATGACAAAAGTAGGAATCACTTTCAATGTCAGAACGTACACATTTCTTATGGACCTATGTATCCGTAATTGCAAAAGGCGTTTAGCATACTACTTATTTGAGGAAATGAAAGAAAGGGGTGTATATCCAGATCAGAAAGCATATAATACTCTAATAGTTGCCTTTTGTAATGCTGAAGAAATGATTATGGCGCAGGCATTATATTATGAAATGTTGCGGGAGGGCTGTTCACCAGATGTAATTACTTATACTAGTTTGAGTAATGCATATTGGAAGTTAAACATGATAGACCAGGCTCATAAGTTGTATGACGAAATGAGGGCAATTCTTTTTTCCTGA 2001 0.3743 MAVKCLLRSRVHFQQPRFFRFYSPYSSALMLDDETPNFNVPVPKTPAKLSRLVVKVFKSLNWGVAREVKFKGLVQRHGFYHSINSFRIIIHTYALAGMSLEVFILLRDIVEYYKEQNRDAFELFSVLIDSPHHVKMKRSVVVFDMLMKVFASNSMLEHAYYVFVNAREVGIQPNIMSCNFLLKCLVEANRVDGVRCFFEDLRKFGPKMNIHTYTIMMNFYCRDVGCSVDIRRASEILGKIYRSGETPTVVTYSTYIKGLCKVGSVEVALKLICDLHRKNQPLNSHCFNAVIYGLCQRRAVDEASLVLEEMKNSVILPDVYSYSILVDAFCKNGDDKRAIDLMTDMKLYGIKPSIVSYTSLIRGLCKNRPMQSLMNIFHEIGASGCKYDQIMYETLVDGFCRKGDMRSAIHLLEEMGDNNFAPSAFSYCSLIRGFYKLRQFTNALKIYGIMQKRGFWPDTITCNHVLSIYCRKREFNEALALSEKFQEHGVNLNPYSYNEFIHKLCRESFPEKALQLLPLMLKNNVLPGVVNYSTLITGFVKHSNSKKAVVLFTRMTKVGITFNVRTYTFLMDLCIRNCKRRLAYYLFEEMKERGVYPDQKAYNTLIVAFCNAEEMIMAQALYYEMLREGCSPDVITYTSLSNAYWKLNMIDQAHKLYDEMRAILFS 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g02406 666 Pfam PPR repeat family 527 574 IPR002885 -
Vivi2g02406 666 Pfam PPR repeat family 173 222 IPR002885 -
Vivi2g02406 666 Pfam PPR repeat family 457 506 IPR002885 -
Vivi2g02406 666 Pfam PPR repeat family 283 331 IPR002885 -
Vivi2g02406 666 Pfam PPR repeat family 389 436 IPR002885 -
Vivi2g02406 666 Pfam PPR repeat family 597 644 IPR002885 -
Vivi2g02406 666 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Vivi2g02406 666 Pfam PPR repeat 245 271 IPR002885 -
Vivi2g02406 666 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 318 352 IPR002885 -
Vivi2g02406 666 Pfam PPR repeat 355 385 IPR002885 -
Vivi2g02406 666 NCBIfam pentatricopeptide repeat 532 563 IPR002885 -
Vivi2g02406 666 NCBIfam pentatricopeptide repeat 250 279 IPR002885 -
Vivi2g02406 666 NCBIfam pentatricopeptide repeat 320 353 IPR002885 -
Vivi2g02406 666 NCBIfam pentatricopeptide repeat 566 598 IPR002885 -
Vivi2g02406 666 NCBIfam pentatricopeptide repeat 425 458 IPR002885 -
Vivi2g02406 666 NCBIfam pentatricopeptide repeat 355 388 IPR002885 -
Vivi2g02406 666 NCBIfam pentatricopeptide repeat 286 319 IPR002885 -
Vivi2g02406 666 NCBIfam pentatricopeptide repeat 391 423 IPR002885 -
Vivi2g02406 666 NCBIfam pentatricopeptide repeat 460 493 IPR002885 -
Vivi2g02406 666 NCBIfam pentatricopeptide repeat 601 634 IPR002885 -
Vivi2g02406 666 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 633 666 IPR002885 -
Vivi2g02406 666 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 563 597 IPR002885 -
Vivi2g02406 666 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Vivi2g02406 666 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 598 632 IPR002885 -
Vivi2g02406 666 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 458 492 IPR002885 -
Vivi2g02406 666 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 423 457 IPR002885 -
Vivi2g02406 666 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 277 507 - -
Vivi2g02406 666 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 528 562 IPR002885 -
Vivi2g02406 666 Gene3D Tetratricopeptide repeat domain 226 315 IPR011990 GO:0005515
Vivi2g02406 666 Gene3D Tetratricopeptide repeat domain 575 665 IPR011990 GO:0005515
Vivi2g02406 666 Gene3D Tetratricopeptide repeat domain 316 401 IPR011990 GO:0005515
Vivi2g02406 666 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 493 527 IPR002885 -
Vivi2g02406 666 Gene3D Tetratricopeptide repeat domain 57 225 IPR011990 GO:0005515
Vivi2g02406 666 Gene3D Tetratricopeptide repeat domain 402 559 IPR011990 GO:0005515
Vivi2g02406 666 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 422 IPR002885 -
Vivi2g02406 666 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 248 282 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g02406 Vivi-Chr2 111009207 111017589 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g02406 230 666 Glycosyltransferase AT1G05670 26.004 3.64e-50 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g02406 - - cam:101492947 1028.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g02406 2 111009207 111017589 Vivi2g02406 2 111009207 111017589 ECH