Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01956 ATGGGCACTACTACAGTCATGAGATGCTCTTCCGGCAATGCTTTCTTGAGAGCTCTCAAACCCATTTCTCGAAATTCATACCTTCCCAATTCACTTCCATTCTCTTCATCTTCAACGCCGATCACCAAAGGTGGATCAAGCTACTCTCACGGTGGTGGGAGAGCATATGATGCATTGCTGTTGGATGCTGGAGGTACCCTCTTGCAGTTGACCAATCCTGTTGCAGATACTTATGCCGCTATTGGATCCAAATATGGTTTGACTGTGAATTCAGCTGAGATAAAACAAGGATTTAAGAGAGCATTTAGTGCTCAGTGGCCTGAAAAACTACGTTACCAGGGTGATGGAAGGCCATTTTGGAAATTTGTAGTTTCTGAAGCCACTGGTTGTGGAAACGAAGACTTTTTTGAGGAAGTTTATGAGTACTATGCAAAAGGTGATGCATGGCATCTTCCAAATGGAGCTTTTGAAACAATGACTCTTCTCAAGGATGCTGGAGTTAAGATGGCTGTTGTATCCAATTTTGACTCCCGCTTAAGGAAGCTATTGAAGGATCTTAACGTTTTACATCTATTTGATGCTGTCATTATATCATCAGAGGTTGGATATGAAAAACCAGACCCAAGAATATTTCAAGCTGCTCTAGATCAAGTAAATGTAGAGGCTGGCAAAGCCTTACACATTGGAGATGATCTAAAAGCAGATAAACTGGGGGCCAATGCTGTAGGGATAGATTGCTGGTTATTGGGTATTGATGTGAAGACATTCTCTGAGATACAAACCCGTATCCTCAATCCAGAGGCATAA 807 0.4213 MGTTTVMRCSSGNAFLRALKPISRNSYLPNSLPFSSSSTPITKGGSSYSHGGGRAYDALLLDAGGTLLQLTNPVADTYAAIGSKYGLTVNSAEIKQGFKRAFSAQWPEKLRYQGDGRPFWKFVVSEATGCGNEDFFEEVYEYYAKGDAWHLPNGAFETMTLLKDAGVKMAVVSNFDSRLRKLLKDLNVLHLFDAVIISSEVGYEKPDPRIFQAALDQVNVEAGKALHIGDDLKADKLGANAVGIDCWLLGIDVKTFSEIQTRILNPEA 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01956 268 CDD HAD_dREG-2_like 155 265 - -
Vivi2g01956 268 Gene3D - 72 144 IPR044924 -
Vivi2g01956 268 Pfam Haloacid dehalogenase-like hydrolase 61 246 IPR041492 -
Vivi2g01956 268 NCBIfam HAD-IA family hydrolase 162 243 IPR006439 -
Vivi2g01956 268 NCBIfam HAD hydrolase, REG-2-like, family IA 59 248 IPR011949 -
Vivi2g01956 268 SFLD Haloacid Dehalogenase 56 249 - -
Vivi2g01956 268 PANTHER - 42 265 - -
Vivi2g01956 268 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 56 249 - -
Vivi2g01956 268 Gene3D - 60 249 IPR023214 -
Vivi2g01956 268 SUPERFAMILY HAD-like 56 250 IPR036412 -
Vivi2g01956 268 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 162 175 IPR006439 -
Vivi2g01956 268 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 192 208 IPR006439 -
Vivi2g01956 268 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 56 67 IPR006439 -
Vivi2g01956 268 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 210 230 IPR006439 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01956 Vivi-Chr2 91962015 91966319 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01956 - - tpra:123911032 468.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g01956 2 91962015 91966319 Vivi2g01956 2 91962015 91966319 ECH