Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01912 ATGAATTATGGCGATGGATACGCTGTTGAAGTCACCGGTCTCTCTCCCAATGCCACCGATAAAGATGTCTCTGAGTTTTTCGCTTTCTCTGGTACCATTCAGCATCTTGAAATTATCAGGTCTGGTGATTATGCTTGCACTGCTTACGTGACCTTCAAAGATGCATATTCTCAAGAAACTGCATGTTTACTCAGTGGAGCCACTATTTTAGATCAACGTGTATGCATAACACGCTGGGGACAGTATGCAGAAGAATTTGATTTTTGGAACACGCCCTCCCGTAGTCACGAGGAAGAGAATTATTCAACTACACACCATAGCAGTGAATTTGTTTCCTCTGCTGGAGAAGCAGTTTCCATGACTCAAGAAGTTGTCAAGACCATGCTAGCAAAGGGATATATTCTCAGTAAGGATGCACTATCTAAGGCCAAAGACTTTGACGAGTCACACCGCGTTTCTGCCACTGCAACAGCCAAGGTTTCTGAATTGAGCCAGAGAATCGGCCTCACTGATAAGATATCTGCTGGCTATGAAGCTGTTAAATCTGTCGATCAGAAGTATAATGTCTCTGAAACAACCATCGCAGCTGCATCGGCAACTGGAAGATCAGTAGTAGCCGCTGCAAACTCTGTCGTAAATAGTAGCTATTTTTCAAAGGGAGCCTTGTGGATGTCTGGTGCTCTAACCCGGGCAGCTCAAGCTGCATCTGATTTGGGCAACCGTGGTACTAGGCAGTAA 738 0.4499 MNYGDGYAVEVTGLSPNATDKDVSEFFAFSGTIQHLEIIRSGDYACTAYVTFKDAYSQETACLLSGATILDQRVCITRWGQYAEEFDFWNTPSRSHEEENYSTTHHSSEFVSSAGEAVSMTQEVVKTMLAKGYILSKDALSKAKDFDESHRVSATATAKVSELSQRIGLTDKISAGYEAVKSVDQKYNVSETTIAAASATGRSVVAAANSVVNSSYFSKGALWMSGALTRAAQAASDLGNRGTRQ 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01912 245 SMART rrm1_1 8 78 IPR000504 GO:0003723
Vivi2g01912 245 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 81 IPR000504 GO:0003723
Vivi2g01912 245 CDD RRM_Vip1_like 9 77 IPR034360 -
Vivi2g01912 245 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 72 IPR000504 GO:0003723
Vivi2g01912 245 Gene3D - 3 84 IPR012677 -
Vivi2g01912 245 SUPERFAMILY RNA-binding domain, RBD 4 81 IPR035979 GO:0003676
Vivi2g01912 245 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 8 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01912 Vivi-Chr2 89504391 89507717 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01912 - - gsj:114378905 389.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g01912 2 89504391 89507717 Vivi2g01912 2 89504391 89507717 ECH