Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01619 ATGATTGATTCCAGAGTGTTTGGCCAGAAATGGTCGGGATTACTTACCGCAGTTTGTGCATGCAGAAGCAGAATACCCCTATTTCTTAAACGCATAATCTCTCGTAACTGGTTTTCAAGACTCTGGAATAGTTTCAAGTCAATCTTCCAAAAAGCTCTAAAGATTGGAGACACGGCCAAAGAACTTCCTGATTTGAAAGACTTTTTACACTTCTCCGGATACTTAAACTCTTCCACTTCGAATCCAAATTTCACTGATGAATTCACGGTAAATCTTCAATCTGCAATAATCAAATTTCAGAAAACTTTCAATCTCAAAACTTCAGGTCAGCTTGATGAAAATACATATAATATTCTGTCAAAGCCACGTTGCGGTGTTCCTGACATCGTAAACGAAACCACCACCATGAGTAACGACGTTAAGTCGTTTAAACCATGGTGGACGGGAAAAGAGTTGAAATATGCTTTTCACCCGGAGAATAACCTTCCGGAGAATGTTAAGTCGTTGTTTCAAGACGCGTTTAATCGTTGGTCGAAGGTAACTGCGTTGGACTTCGTAGAGACGGTGTCGTTTAATGGTTCGGATATTCGTATAGCGTTTGTGACGATGGATGGAAAAGGTGGAATGGTTGGAGGTGGTTATGTAAACAATAGTGTTCATGTTGGGAGTATATATTTGGATGCTGAGGAAAATTGGGTGGTGTCGAGTAAGAGTGCTATTGATGAGGATGATGTGGATTTGGAATCATTTGTGATGCATCAAATTGGACATTTATTAGGGTTGGGACATTCTTCTGTGGAAGAGTCTATTATGTATCCGATTGTGTTGCCAAAAAAGAAGATTGAGTTGGTGAATGATGATGATTTGCAGAAGATTCAGCAAATATATGGTGTGACAGTGACTCCTTGA 909 0.3971 MIDSRVFGQKWSGLLTAVCACRSRIPLFLKRIISRNWFSRLWNSFKSIFQKALKIGDTAKELPDLKDFLHFSGYLNSSTSNPNFTDEFTVNLQSAIIKFQKTFNLKTSGQLDENTYNILSKPRCGVPDIVNETTTMSNDVKSFKPWWTGKELKYAFHPENNLPENVKSLFQDAFNRWSKVTALDFVETVSFNGSDIRIAFVTMDGKGGMVGGGYVNNSVHVGSIYLDAEENWVVSSKSAIDEDDVDLESFVMHQIGHLLGLGHSSVEESIMYPIVLPKKKIELVNDDDLQKIQQIYGVTVTP 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01619 302 Gene3D Collagenase (Catalytic Domain) 54 300 IPR024079 GO:0008237
Vivi2g01619 302 Pfam Putative peptidoglycan binding domain 63 119 IPR002477 -
Vivi2g01619 302 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 144 298 - -
Vivi2g01619 302 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Vivi2g01619 302 Pfam Matrixin 147 297 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Vivi2g01619 302 SUPERFAMILY PGBD-like 52 129 IPR036365 -
Vivi2g01619 302 PANTHER MATRIX METALLOPROTEINASE 53 297 - -
Vivi2g01619 302 ProSitePatterns Matrixins cysteine switch. 122 129 IPR021158 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Vivi2g01619 302 PRINTS Matrixin signature 170 185 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vivi2g01619 302 PRINTS Matrixin signature 119 132 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vivi2g01619 302 PRINTS Matrixin signature 284 297 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vivi2g01619 302 PRINTS Matrixin signature 250 275 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vivi2g01619 302 SMART col_5 143 298 IPR006026 GO:0006508|GO:0008237|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01619 Vivi-Chr2 72463250 72466145 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01619 - - psat:127119423 315.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g01619 2 72463250 72466145 Vivi2g01619 2 72463250 72466145 ECH