Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01399 ATGCTATGCTCTCTAATCCGTTTGCGCCGTAACTCATCTTCAACCTCATTCCTTCATCATCTCAGTAACCGTTTCTATTCCCCAACCGCCGCCGCAACCGCCGCCATGGTTGTTCACGCTAAGGACGAATCCTACCTAAGCGCCACCATCCCAAAGCGCATCAGTTTATTCGAGGCGATTCAGGCGGAGCAACAGACTCGCCGGCTATCCCTGTCACCGGATCCGATTAAGGTGACACTCCCCGACGGAAAAGTGAAGGAAGGGAAGAAATGGCAAACGACTCCGTTTGATGTGGCTCGTGAAATCTCTAAGAATTTGGCCAATAATGCTCTCATTTCTAAGGTTAATGGTGTTTTGTGGGATATGAATCGTCCTCTTGAAGAGGATTCGTTGCTTCAGATATTTAAGTTTGATGATGATGAAGGACGTGATACTTTTTGGCATTCTAGTGCTCACATTCTTGGCCAGTCTCTTGAGACAGAGTATGGATGCAAGCTTTGCATTGGACCTTGCACTACCAGAGGAGAGGGTTTCTATTATGATGCATTTTATGGTGATTTGGGTTTGAATGATGATCACTTTAAACAAATTGAAGCTGGAGCATTGAAGGCTGTTGCGGAAAAACAACCCTTTCAGCGCATTGAAGTTACACGTGACCAGGCGCTTGAGATATTTTCTGATAATAAGTTTAAGGTCGAAATTATCAATGATTTGCCCGCTGACAAGACCATAACAGTGTACAGATGTGGACCCCTAATTGATTTATGTCGAGGACCACATATTCCTAATACATCCTTTGTCAAAGCAATTGCATGTTTGAAGGCTTCGTCAGCATATTGGAGGGGAGACAAAGATAGAGAAAGTTTACAAAGAGTTTATGGCATATCTTATCCTGATCAGAAGAGTTTAAAGGAATATTTGCATCGCCTTGAAGAGGCTAAAAAGTACGATCACAGGATTGTGGGGGTGAAACAAGAGCTTATTCTTCATCACGAGTGGAGCCCGGGAAGCTGGTTTTTTCTTCCACACGGTACTCGCATCTACAACAAACTCATGAACTTCATTCGAAATCAGTACAGAGACAGGGGTTATCAAGAGGTTATATCACCGAATATGTATAACATGGAGCTGTGGAAGGCATCTGGTCATGCAGAAAAGTATAAAGATGATATGTTTGTTTTGGAGGTTGATAAACAAGAGTTTGGATTGAAACCAATGAATTGCCCAGGACACTGCTTAATGTTTAAACACAGAGTTCGTTCATATAGAGAACTTCCTCTTCGTTTTGCTGATTTTGGGGTTTTGCATCGAAATGAGGCCAGTGGTGCCCTAAGTGGACTAACACGTGTTAGGAGATTTCAGCAGGATGATGCACATATTTTCTGCAGGGAGTCCCAGGTTAAAGATGAAGTCAGAAAAGCCTTGGACTTTATTGATTATGTCTATCAAATATTCGGTTTCACATATGAACTGAAACTTTCAACGAGGCCTGAGAATAAGCTTGGAGATGATGCAACGTGGGATAGGGCTGAAAGTGCTCTCAAGGAGGCTTTGGATGAGTTTGGCAAGCCATGGCAGTTGAATGAAGGGGATGGAGCATTCTATGGACCAAAGATAGATATCAGTGTATCCGATGCGTTGAGTAGAAAATTCCAGTGTGCAACTCTACAGCTTGACTTCCAGCTTCCTGATCGTTTTAAGTTGGAATTCTCAGCTGAGGATGAAGCCAAAATTGAGAGGCCTGTTATGATACATAGAGCCATTCTAGGATCAGTTGAACGCATGTTTGCGATACTATTAGAGCACTACAAGGGTAAATGGCCCTTCTGGCTCAGTCCTCGTCAAGCAATTTTGTGCCCTGTTTCTGAGAAATCACAAGCTTATTCTCTGAAGGTACGAGATCAAATCCACCAAGCAGGATATCATGTAGATGCTGATACAACTGATAGAAAGATTCAGAAGAAGGTACGAGAAGCTCAGTTAGCACAGTACAACTACATCTTGGTTGTTGGGGAAGAGGAGGCGAATACTGGACAGGTGAGTGTACGAGTCAGGGATAAGGCAGACCATAGCGTTATGACCATTGAGAACCTTCTCAAACACTTCAGTGACGAGGTTGCAGCTTTCCATTAA 2133 0.4327 MLCSLIRLRRNSSSTSFLHHLSNRFYSPTAAATAAMVVHAKDESYLSATIPKRISLFEAIQAEQQTRRLSLSPDPIKVTLPDGKVKEGKKWQTTPFDVAREISKNLANNALISKVNGVLWDMNRPLEEDSLLQIFKFDDDEGRDTFWHSSAHILGQSLETEYGCKLCIGPCTTRGEGFYYDAFYGDLGLNDDHFKQIEAGALKAVAEKQPFQRIEVTRDQALEIFSDNKFKVEIINDLPADKTITVYRCGPLIDLCRGPHIPNTSFVKAIACLKASSAYWRGDKDRESLQRVYGISYPDQKSLKEYLHRLEEAKKYDHRIVGVKQELILHHEWSPGSWFFLPHGTRIYNKLMNFIRNQYRDRGYQEVISPNMYNMELWKASGHAEKYKDDMFVLEVDKQEFGLKPMNCPGHCLMFKHRVRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCRESQVKDEVRKALDFIDYVYQIFGFTYELKLSTRPENKLGDDATWDRAESALKEALDEFGKPWQLNEGDGAFYGPKIDISVSDALSRKFQCATLQLDFQLPDRFKLEFSAEDEAKIERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAILCPVSEKSQAYSLKVRDQIHQAGYHVDADTTDRKIQKKVREAQLAQYNYILVVGEEEANTGQVSVRVRDKADHSVMTIENLLKHFSDEVAAFH 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01399 710 FunFam Threonine--tRNA ligase mitochondrial 1 607 710 - -
Vivi2g01399 710 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 244 293 IPR012947 GO:0004812|GO:0005524|GO:0043039
Vivi2g01399 710 Gene3D - 139 297 - -
Vivi2g01399 710 Gene3D - 607 709 IPR036621 -
Vivi2g01399 710 Gene3D Bira Bifunctional Protein; Domain 2 299 606 IPR045864 -
Vivi2g01399 710 FunFam Threonine--tRNA ligase mitochondrial 1 297 425 - -
Vivi2g01399 710 Pfam TGS domain 76 136 IPR004095 -
Vivi2g01399 710 Pfam Anticodon binding domain 615 703 IPR004154 -
Vivi2g01399 710 Gene3D - 74 135 IPR012675 -
Vivi2g01399 710 SMART tRNA_SAD_4 244 293 IPR012947 GO:0004812|GO:0005524|GO:0043039
Vivi2g01399 710 NCBIfam threonine--tRNA ligase 147 704 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vivi2g01399 710 SUPERFAMILY TGS-like 76 136 IPR012676 -
Vivi2g01399 710 CDD TGS_ThrRS 76 141 - -
Vivi2g01399 710 SUPERFAMILY ThrRS/AlaRS common domain 138 315 IPR018163 GO:0000166
Vivi2g01399 710 FunFam Threonine--tRNA ligase, cytoplasmic 74 135 - -
Vivi2g01399 710 Hamap Threonine--tRNA ligase [thrS]. 141 708 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vivi2g01399 710 CDD ThrRS_core 317 613 IPR033728 -
Vivi2g01399 710 FunFam Threonyl-tRNA synthetase, mitochondrial 140 297 - -
Vivi2g01399 710 FunFam Probable threonine--tRNA ligase, cytoplasmic 431 606 - -
Vivi2g01399 710 ProSiteProfiles TGS domain profile. 74 136 IPR004095 -
Vivi2g01399 710 SUPERFAMILY Class II aaRS and biotin synthetases 317 600 IPR045864 -
Vivi2g01399 710 SUPERFAMILY Class II aaRS ABD-related 601 706 - -
Vivi2g01399 710 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 342 608 IPR006195 -
Vivi2g01399 710 CDD ThrRS_anticodon 613 702 IPR047246 -
Vivi2g01399 710 PRINTS Threonyl-tRNA synthetase signature 537 565 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vivi2g01399 710 PRINTS Threonyl-tRNA synthetase signature 608 620 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vivi2g01399 710 PRINTS Threonyl-tRNA synthetase signature 436 459 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vivi2g01399 710 PRINTS Threonyl-tRNA synthetase signature 581 594 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vivi2g01399 710 PRINTS Threonyl-tRNA synthetase signature 403 431 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vivi2g01399 710 PANTHER THREONINE-TRNA LIGASE 44 709 - -
Vivi2g01399 710 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 398 603 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01399 Vivi-Chr2 59758609 59765824 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01399 K01868 - gmx:100802879 1301.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g01399 2 59758609 59765824 Vivi2g01399 2 59758609 59765824 ECH