Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01372 ATGGCGGCACCCGAAACCACACTTCACTCCACAGATTCTCCCTTAAAGCGGCCAAGAGAAGACGAACTGAACGGTGTCTCCGACACTCTTTCCAAAGAATCTCAACCTAAAGGTTTATCAGCTGTTATCCCTGGCTGGTTCTCTGAAATCAGCCCAATGTGGCCAGGGGAGGCACACTCCTTGAAAGTGGAAAAAGTTTTGTTTCAGGGAAAATCTGATTATCAGGATGTTATGGTCTTTCAGTCAGCAACATATGGCAAGGTTCTTATTTTGGATGGAGTCATTCAGCTCACAGAAAGAGATGAGTGTGCTTACCAAGAGATGATCACTCATCTTCCTCTTTGCTCTATTCCAAACCCCAAAAAGGTTTTGGTTATTGGTGGAGGAGACGGGGGAGTCTTGCGGGAAGTTGCACGCCACTCTTCAGTCGAAAAGATAGACATTTGTGAAATAGACAAGATGGTTGTTGATGTCTCCAAAGAATTTTTCCCTGATATAGCAGTAGGTTTTGCGGATCCACGTGTGACACTTAATATCGGTGATGGAGTTGCATTTTTGAAGGCAGCTCCAGAAGGAACTTATGATGCAGTTATAGTGGATTCATCTGATCCTATTGGTCCTGCTCAAGAGCTTTTTGAAAAGCCCTTTTTTGAGTCAGTTGCAAGGGCTCTTCGTCCAGGAGGAGTTGTGTGTACTCAAGCGGAAAGTATATGGCTTCATATGCACATCATTGAGGACATTGTCGTGAACTGTCGCCAGGTATTCAAAGGGTCTGTCAACTATGCTTGGACCACAGTTCCTACATACCCAAGTGGGATGATTGGTTTTATGCTTTGCTCAACTGAGGGGCCTTCTGTTGATTTCAAGCATCCGGTGAATCCTATTGATGAGAATGATAGCCAGCAGGCGGCAAGACCATTGAAATTTTACAACCGTGAGATTCATTCAGCAGCTTTCTGTTTGCCGTCTTTTGCCAAGAGGGCAATTGCTTCAAAAGAAAACTGA 1005 0.4458 MAAPETTLHSTDSPLKRPREDELNGVSDTLSKESQPKGLSAVIPGWFSEISPMWPGEAHSLKVEKVLFQGKSDYQDVMVFQSATYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHSSVEKIDICEIDKMVVDVSKEFFPDIAVGFADPRVTLNIGDGVAFLKAAPEGTYDAVIVDSSDPIGPAQELFEKPFFESVARALRPGGVVCTQAESIWLHMHIIEDIVVNCRQVFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPSVDFKHPVNPIDENDSQQAARPLKFYNREIHSAAFCLPSFAKRAIASKEN 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01372 334 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 123 136 IPR030373 -
Vivi2g01372 334 FunFam Spermidine synthase 1 97 334 - -
Vivi2g01372 334 PANTHER SPERMIDINE/SPERMINE SYNTHASE 37 332 IPR001045 GO:0003824
Vivi2g01372 334 FunFam Spermidine synthase 1 37 96 - -
Vivi2g01372 334 Hamap Polyamine aminopropyltransferase [speE]. 45 330 IPR001045 GO:0003824
Vivi2g01372 334 Gene3D Vaccinia Virus protein VP39 97 334 IPR029063 -
Vivi2g01372 334 NCBIfam spermidine synthase 46 324 IPR001045 GO:0003824
Vivi2g01372 334 CDD AdoMet_MTases 122 233 - -
Vivi2g01372 334 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 42 329 IPR029063 -
Vivi2g01372 334 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 44 281 IPR030374 -
Vivi2g01372 334 MobiDBLite consensus disorder prediction 12 27 - -
Vivi2g01372 334 PIRSF Spermidine_synth 34 334 IPR030668 GO:0006595
Vivi2g01372 334 MobiDBLite consensus disorder prediction 1 36 - -
Vivi2g01372 334 Pfam Spermidine synthase tetramerisation domain 45 99 IPR035246 -
Vivi2g01372 334 Pfam Spermine/spermidine synthase domain 102 289 - -
Vivi2g01372 334 Gene3D Spermidine synthase, tetramerisation domain 38 96 IPR037163 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01372 Vivi-Chr2 58348039 58351198 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01372 K00797 - gmx:100792107 572.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g01372 2 58348039 58351198 Vivi2g01372 2 58348039 58351198 ECH