Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01363 ATGGCGGATTCAACCTCTTCTCCCGCAACCCTAGAACCCAATCCTCACCATAATTCCCAACCTCCATCTCCCAACCCTGTTCCCACCCAACCCGATCTAGCTCCCCAATCATCACAATCGCAATCTACACCACCCTCTTCCACGCCCCTCCCCACAAACCCTAATTCCATTACACCCTTACCAATTCCACCGTTACTTCCTCCGCCTCCCGCTTTATCATACACCGGAGCCGCTCCTCAAATTCCCGGAGTTCTCCCTCCGTCGGCGCCGTCCTTCCGTCCGCTTGGTGCTCAAGTGCCGCAGTTCACTCCGTTGCCCAATCCAGCCGGTGTCTATCAAAACCCTAATCCACCTCCCGGCGTGTCCGGCTCGGTTCCGATGCCGCAGATGCAACCGATGATGTCATATCAGGTTCCAGGGACTAACCCTGCAATGAGACACTATGCTCCTATCCCAAATGGTTACGCCATGCATCCACAAGGACCTCTAAACCCTGCAGGAATTCCTCGTTATCCACCTCCTTATGGAACTATGGTTCGTCCTGTGTATCCTCCTCGCCTTCCTGGAGCAATCAACATGCTTCCAGTTTCACGCCCACCTGTTGCAGGGATCCCTTCTATTCGCCCTATTATTCCTCCTATTGTCAGACCTGTGGTTCTTCCCAGTGTTACTCCGGCTGAGAAGCAACATACCACTGTTTACATTGGCAAGATTGCACCAACCGTGGAAAATGAGTTCATGCTTTCTCTGCTTAAATTATGTGGGAATATCAAGAGCTGGAAAAGACCTCAGGATTTATCAAGTGGGACTCCTAAAAGTTTTGGGTTTTATGAGTTTGATACTGCTGAAGGGGTTCTCCGTGCTTTACGTCTCCTTACCAAATTGAACATTGATGGGCAAGAACTAATGATCAATGTAGATGAAGCTATGAGAAACTATCTGGAGCGGTATGTACAAAAAAAAACAGAGAATTCAAAGGAAAAGGAAACTCAGGCAACAGAAGCTGAAAAAGATGCTGAAGTTGCAAAACCTTCTGATGTAAATGAGGATGCAAAGCCTGATCCGGAGCTCTCAAATAAGGAAGAGGTTAATGATTCAGTGAACAAGAAATCCCATGATGTGGCAACTTTTGGGATTGTTACGGATGAAGACAGGGAAGCTGATCGGGACACTTTAGAAAAGATCAAAACCATGATAGAGGAGAGGTTGAAGACAAGACCTTTGCCTCCACCACCTCCGCCGCCAGTTCGTGATGGTTCTGTGGATTCATTTTCCGAACAACCTACTAAAACAAGAGAAGGTGACTCTGATGTGGATACAAAGAAGAGTGAAGCAGCAGAAGATAAAAATGAGAGAGATGCAAACAGTGATAATAAGCCCACAAGTGAACATGATAGACCCGAAACCCCCGACAGAAGGCACGACAGAAAAAGCAGGGAGAGAGACCGAGACAGGGAGCTGAAACGGGAAAAGGAAAGAGAACTTGAGAGATATGAAAGAGAAGCTGAGCGGGAACGTATTCGGAAAGAGAGGGAACAAAAACGGAGGATTGAGGAGGTTGAGCGTCAGTTTGAAGTATATTTGAAGGATTGGGAGTATAGGGAAAGAGAGAAAGAGAAAGAACGTCAATATGATAAGGAGAAGGAGAAGGACAGGGAACGTAAACGAAGAAAGGAAATACTTCATGATGAAGAGGATGATGATGGGGATTCTAGAAAGAGGTGGCGCAGAAATGCGATAGAGGAGAAGAGAAAGAAGAGGCTGCGAGAAAAGGAAGATGACCTGGCTGACAGACAAAAAGAAGAGGAGGAAATTGCTGAGGCCAAGAAGAGGAATGACGAGGATCAACAACTGAAGCGACAGAGAGATGCATTGAAGCTGTTGACAGAGCAAATTGTAAATGGTGGTGATGAAACTATGAATAACAGAGAAATTACTAGTGAAATAAAGAATATTATTGCTGTAGAAGATACTGTAGCTGATTATAGTCATGAAGATCATATTGGTGATAGTAATGTACTGAATACTATCAATGATGAATCAGCCATGGCATCTGTAGCCACAACCGATACACAGTCTAGTGGAAATGCTCCTACGAAGAAGTTGGGATTCGGTCTGGTTGGATCTGGAAAAAGAACAACCGTCCCTTCTGTTTTCCACGAAGATGATGAGGCGCACAAGGATAAAAAATTGAGGCCTTTGGTTCCAATTGATTACTCAACAGAGGAGTTGCAGGCTGTTGAACCTACTGCTTCTGGGCCAACACCACCCAATTTGGCTGCAGCTGCAGAATTCGCCAAGCGTATATCTAGTACCAATTTCAAGGAAGAGAGGCTGGATGGTGAAAGAAATAGAAGTAGGCATTCACATGAAAAGTCTAACCACCGGGACAGGGATAGGAGTGATGAAGATGGCACTCACCACAGAGATGAACATAGGGAGAAGAACTCTGACCGTGACAGGGATCGAGATCATGGAATGGAGAAAAACAAGACTTACGATAACAGGAGGCTCTTGGACGCAAAACAGTTAATTGATATGATACCAAAGACCAAGGAGGAGTTGTTCTCATATGAAATAGACTGGGCGGTGTATGACAAGCATCAATTACATGACAGGATGAGACCTTGGATTTCAAAGAAAATCAAAGAGTTTTTGGGAGAAGAAGAAAATACTCTGACAGACTATATTGTTTCAAGTACACAAGAACATGTGAAAGCATCTCAAATGCTAGAGAGTCTTCAGGTCATTTTAGATGAAGAAGCTGAAATGTTTGTTCTCAAAATGTGGAGGATGCTTATCTTTGAAATAAAGAAGGTGGAGACAGGGCTTGCTTTGAGGTCTAAATCATGA 2853 0.449 MADSTSSPATLEPNPHHNSQPPSPNPVPTQPDLAPQSSQSQSTPPSSTPLPTNPNSITPLPIPPLLPPPPALSYTGAAPQIPGVLPPSAPSFRPLGAQVPQFTPLPNPAGVYQNPNPPPGVSGSVPMPQMQPMMSYQVPGTNPAMRHYAPIPNGYAMHPQGPLNPAGIPRYPPPYGTMVRPVYPPRLPGAINMLPVSRPPVAGIPSIRPIIPPIVRPVVLPSVTPAEKQHTTVYIGKIAPTVENEFMLSLLKLCGNIKSWKRPQDLSSGTPKSFGFYEFDTAEGVLRALRLLTKLNIDGQELMINVDEAMRNYLERYVQKKTENSKEKETQATEAEKDAEVAKPSDVNEDAKPDPELSNKEEVNDSVNKKSHDVATFGIVTDEDREADRDTLEKIKTMIEERLKTRPLPPPPPPPVRDGSVDSFSEQPTKTREGDSDVDTKKSEAAEDKNERDANSDNKPTSEHDRPETPDRRHDRKSRERDRDRELKREKERELERYEREAERERIRKEREQKRRIEEVERQFEVYLKDWEYREREKEKERQYDKEKEKDRERKRRKEILHDEEDDDGDSRKRWRRNAIEEKRKKRLREKEDDLADRQKEEEEIAEAKKRNDEDQQLKRQRDALKLLTEQIVNGGDETMNNREITSEIKNIIAVEDTVADYSHEDHIGDSNVLNTINDESAMASVATTDTQSSGNAPTKKLGFGLVGSGKRTTVPSVFHEDDEAHKDKKLRPLVPIDYSTEELQAVEPTASGPTPPNLAAAAEFAKRISSTNFKEERLDGERNRSRHSHEKSNHRDRDRSDEDGTHHRDEHREKNSDRDRDRDHGMEKNKTYDNRRLLDAKQLIDMIPKTKEELFSYEIDWAVYDKHQLHDRMRPWISKKIKEFLGEEENTLTDYIVSSTQEHVKASQMLESLQVILDEEAEMFVLKMWRMLIFEIKKVETGLALRSKS 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01363 950 CDD RRM_RBM25 231 314 IPR034268 -
Vivi2g01363 950 Gene3D - 223 343 IPR012677 -
Vivi2g01363 950 Coils Coil 578 631 - -
Vivi2g01363 950 MobiDBLite consensus disorder prediction 1 64 - -
Vivi2g01363 950 SUPERFAMILY RNA-binding domain, RBD 220 308 IPR035979 GO:0003676
Vivi2g01363 950 MobiDBLite consensus disorder prediction 47 64 - -
Vivi2g01363 950 SMART pwi_2 866 939 IPR002483 GO:0006397
Vivi2g01363 950 Coils Coil 534 554 - -
Vivi2g01363 950 MobiDBLite consensus disorder prediction 15 31 - -
Vivi2g01363 950 FunFam RNA Binding Motif protein homolog 829 945 - -
Vivi2g01363 950 MobiDBLite consensus disorder prediction 321 512 - -
Vivi2g01363 950 MobiDBLite consensus disorder prediction 321 369 - -
Vivi2g01363 950 SUPERFAMILY PWI domain 871 938 IPR036483 GO:0006397
Vivi2g01363 950 MobiDBLite consensus disorder prediction 32 46 - -
Vivi2g01363 950 SMART rrm1_1 232 305 IPR000504 GO:0003723
Vivi2g01363 950 Coils Coil 318 338 - -
Vivi2g01363 950 MobiDBLite consensus disorder prediction 376 403 - -
Vivi2g01363 950 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 233 302 IPR000504 GO:0003723
Vivi2g01363 950 Pfam PWI domain 873 936 IPR002483 GO:0006397
Vivi2g01363 950 Gene3D PWI domain 829 945 - -
Vivi2g01363 950 Coils Coil 481 530 - -
Vivi2g01363 950 MobiDBLite consensus disorder prediction 772 834 - -
Vivi2g01363 950 MobiDBLite consensus disorder prediction 689 712 - -
Vivi2g01363 950 ProSiteProfiles PWI domain profile. 853 950 IPR002483 GO:0006397
Vivi2g01363 950 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 1 950 - -
Vivi2g01363 950 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 231 311 IPR000504 GO:0003723
Vivi2g01363 950 MobiDBLite consensus disorder prediction 428 512 - -
Vivi2g01363 950 MobiDBLite consensus disorder prediction 536 618 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01363 Vivi-Chr2 58071337 58078955 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01363 K12822 - gmx:100809428 1144.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g01363 2 58071337 58078955 Vivi2g01363 2 58071337 58078955 ECH