Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01343 ATGGAATTCAGTAAATCTTTTTTAGATCATAAAGTAACTAAGTCTTCACCTTCCCCTGCACTATGTTGTGTGGAGACAGTGCCTAAAGATGATGAACAAAATTCTCATATTACAGCTTTTAATTCAGGAGAAGGATCTTCCAATTCCGGTAATGAATCGTCTTCGTCAACTACCGTACGCGATGTGCATATATCAATGCGGTTAATGGAGGACTTTCTTGATCTTGCGAAAGAAAATACCGAAAAGGATCTGGAAACATGCGGTATACTTGGTGCATTTCTGGAGAAAGGAACCCTCTATATGACTACACTGATCATACCGAAGCAGGAATCAGCATCTAATTCTTGTAATGCCACAAATGAGGAGGAAGTTTTCACAATTCTAAATGAAAGATCCCTTTATCCTGTGGGATGGATCCATACGCACCCTTCTCAAAGTTGTTTCATGTCATCGGTGGATCTGCACACTCAATATTCGTACCAGGCGATGATTCCGGAGGCATTTGCCATTGTATTGGCACCAACTGACACCTCAAAGAGCTGTGGACTCTTTCGCATAACCGAACCTGATGGGATGAATATTCTAAAAAATTGTCCGGAGAGAGGATTTCATCCACACAAAGAACCAGATAATGGGAGCCCTGTGTATGAGCACTGCTCCAATGTGTACAAAAATTCCAATCTAAGGTTTGAAATATTTGATTTACGCTAA 711 0.4065 MEFSKSFLDHKVTKSSPSPALCCVETVPKDDEQNSHITAFNSGEGSSNSGNESSSSTTVRDVHISMRLMEDFLDLAKENTEKDLETCGILGAFLEKGTLYMTTLIIPKQESASNSCNATNEEEVFTILNERSLYPVGWIHTHPSQSCFMSSVDLHTQYSYQAMIPEAFAIVLAPTDTSKSCGLFRITEPDGMNILKNCPERGFHPHKEPDNGSPVYEHCSNVYKNSNLRFEIFDLR 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01343 236 Gene3D Cytidine Deaminase, domain 2 40 236 - -
Vivi2g01343 236 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 58 166 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vivi2g01343 236 PANTHER AMSH-LIKE PROTEASE 9 236 - -
Vivi2g01343 236 SMART pad1_6 61 189 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vivi2g01343 236 SUPERFAMILY JAB1/MPN domain 62 190 - -
Vivi2g01343 236 MobiDBLite consensus disorder prediction 35 59 - -
Vivi2g01343 236 ProSiteProfiles MPN domain profile. 62 192 IPR037518 -
Vivi2g01343 236 FunFam AMSH-like ubiquitin thioesterase 2 42 236 - -
Vivi2g01343 236 CDD MPN_AMSH_like 60 236 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01343 Vivi-Chr2 57076163 57079234 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01343 K11866 - gmx:100807282 389.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g01343 2 57076163 57079234 Vivi2g01343 2 57076163 57079234 ECH