Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01313 ATGGCACGCAAGAAGATCAGAGAGTATGATTCCAAGAGATTGTTGAAGGAACACTTTAAGAGACTATCTGGCAAAGACTTACCTATCAAGTCTGCACAAGTTACGGAGTCCACTGATATCACTCAGCTGCAAGACAATGAACCCTGGCTTTCTTCTTCTAAATTGGTTGTGAAGCCTGACATGTTATTTGGGAAGCGTGGTAAAAGTGGTTTGGTTGCCTTGAATTTGGATTTGGCACAAGTTGCTTCATTTGTGAAAGAGCGTCTCGGTAAAGAGGTTGAAATGGGTGGATGCAAGGGACCGATAACAACTTTCATTGTTGAACCTTTCATCCCACATAATGAAGAGTTTTACCTTAACATTGTCTCTGACAGACTCGGGAACAGCGTAAGCTTTTCAGAATGTGGAGGAATCGATATTGAAGAGAATTGGGATAAGGTTAAGACTGTATTTGTTCCAACGGGAGTGTCTGTTACATCAGAAATTGTTGCTCCACTTGTTGCAACCCTTCCCTTGGAGATCAAAGGGGAAATCGAGGAATTTCTCAAGGTGGTTTTCACTTTGTTTCAAGACCTGGATTTCACTTTCTTAGAGATGAATCCTTTCACATTGGTTGATGGAAAGCCTTATCCTTTGGATATGAGAGGCGAACTTGATGACACTGCTGCTTTCAAGAACTTCAAGAAGTGGGGGAACATTGAGTTTCCACTACCATTTGGAAGGGTTATGAGTGCCACCGAGTCTTTCATTCATGGATTAGATGAAAAGACCAGTGCATCTCTGAAATTCACTGTGTTGAACCCAAAGGGCCGAATTTGGACAATGGTTGCTGGTGGAGGTGCTAGTGTCATCTATGCTGACACAGTTGGAGATCTAGGCTTTGCATCTGAGCTTGGAAACTATGCCGAATACAGCGGTGCACCCAATGAAGAGGAGGTTTTGCAATACGCCAGAGTTGTGATTGATTGTGCAACTGCAGATCCCGATGGCCAAAAAAGGGCTCTCGTTATAGGAGGAGGCATAGCTAACTTCACCGATGTTGCTGCTACTTTTAGTGGCATCATTCGGGCACTAAAGGAGAAGGAATCGAAGTTAAAGGCAGCAAGAATGCACATTTATGTGAGGAGAGGAGGTCCAAACTACCAAAAGGGTCTAGCTAAAATGCGAGCACTCGGAGAGGAAATTGGAATCCCTCTTGAGGTGTATGGACCTGAAGCAACGATGACTGGTATATGCAAAGAGGCGATACAATGCATTACTGCTTCCGCTTAA 1272 0.4379 MARKKIREYDSKRLLKEHFKRLSGKDLPIKSAQVTESTDITQLQDNEPWLSSSKLVVKPDMLFGKRGKSGLVALNLDLAQVASFVKERLGKEVEMGGCKGPITTFIVEPFIPHNEEFYLNIVSDRLGNSVSFSECGGIDIEENWDKVKTVFVPTGVSVTSEIVAPLVATLPLEIKGEIEEFLKVVFTLFQDLDFTFLEMNPFTLVDGKPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFGRVMSATESFIHGLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGFASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGQKRALVIGGGIANFTDVAATFSGIIRALKEKESKLKAARMHIYVRRGGPNYQKGLAKMRALGEEIGIPLEVYGPEATMTGICKEAIQCITASA 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01313 423 FunFam ATP-citrate synthase alpha chain protein 1 233 - -
Vivi2g01313 423 Gene3D - 1 233 - -
Vivi2g01313 423 SUPERFAMILY Succinyl-CoA synthetase domains 257 402 IPR016102 -
Vivi2g01313 423 FunFam ATP-citrate synthase alpha chain protein 240 422 - -
Vivi2g01313 423 Gene3D - 240 422 IPR016102 -
Vivi2g01313 423 Pfam ATP citrate lyase citrate-binding 241 417 IPR032263 -
Vivi2g01313 423 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 4 236 - -
Vivi2g01313 423 PANTHER SUCCINYL-COA SYNTHETASE BETA CHAIN 5 389 IPR005809 GO:0006099
Vivi2g01313 423 Pfam ATP-grasp domain 6 203 IPR013650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01313 Vivi-Chr2 56413370 56417211 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01313 1 423 Acyl Lipid Metabolism Gene Families AT1G10670 87.707 0.0 783
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01313 K01648 - gmx:100818180 788.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g01313 2 56413370 56417211 Vivi2g01313 2 56413370 56417211 ECH