Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00717 ATGTCTGTTCGAATGTTGAACCCTAATGCAGAAGTTCTGAACAAATCGGAGGCACTTCACATGAACATCAATGCCGCTAAGGGTTTGCAAGATGTTCTCAAATCCAATCTCGGTCCTAAAGGCACTATCAAAATGCTCGTTGGTGGTTCTGGTGATATCAAACTCACCAAAGATGGTAACACTCTTTTGAAAGATATGCAAATTCAGAATCCGACTGCTATTATGATTGCTAGGGCGGCGGTTGCACAGGATGACATTAGTGGAGATGGCACAACTTCTACTGTCCTCTTCATTGGGGAACTTATGAGACAATCTGAGCGTTACATTGATGATGGTATGCATCCACGTGTATTGGTTGATGGTTTTGAAATTGCAAAGAGAGCAACTCTACAATTTCTTGAGAAGTTTAAGACTCCTGTTGTCATGGGTAACGAGCCTGACAAAGAGATTCTCAAGATGGTAGCAAGAACAACAGTGAGGACCAAGTTGTATGAGGCACTTGCTGATCAATTGACAAATATAGTTGTTGATGCGGTTTTATGCATCCGTAAGCCTGAGGAAGCAATTGATCTGTTTATGGTTGAGATTATGCACATGCGGCAAAAGTTTGATGTTGACACACGTTTGGTTGAGGGTCTTGTCCTTGATCATGGTTCTCGACACCCTGATATGAAGCGACGTGCAGAGAACTGTCATATCTTGACGTGCAACGTATCTCTAGAATACGAAAAAAGTGAAATAAATTCAGGTTTTTTCTACTCAAATGCTGAACAGAGAGAGGCCATGGTTATAGCTGAAAGGCGTCAGGTTGATGAAAAAGTTAAAAAAATCATTGAACTGAAAAGGAAGGTCTGTGCTGATAATGATAGCAGTTTTGTTGTCATCAACCAAAAAGGAATTGATCCCCCATCATTGGACATGCTTGCAAGAGAAGGCATAATTGCCCTACGCCGAGCAAAGAGGAGAAACATGGAAAGATTGGTTTTGGCCTGTGGAGGAGAGGCTGTAAACTCTGTAGAAGACTTGACTCCTGAATCTCTTGGTTGGGCAGGATTGGTATATGAACATGTCCTTGGTGAAGATAAATATACATTTGTGGAGAATGTGAAGAACCCCTTTTCTTGCACAATCTTGATTAAAGGTCCTAATGACCACACAATAGCTCAGATTAAAGACGCTGTCCGTGATGGTTTGAGGTCAGTAAAGAATACCATTGAAGATGAATCTGTTGTCTTGGGGGCTGGTGCATTTGAAGTAGCTGCTAGACAACATCTCATAAACGAAGTTAAGAAAACTGTTCAAGGGCGTGCACAACTTGGTGTTGAGGCTTTTGCTGATGCACTTCTTGTGGTGCCTAAGACAATTGCTGAAAACTCTGGGCTTGACACTCAAGATGCGATTATTGCCCTTACGGGAGATCATGACAGAGGGAATATTGTTGGTTTGAACCTAAACACCGGAGAACCTATAGACCCTCAAATGGAGGGTATTTTTGACAACTATTCTGTGAAGCGCCAAATCATAAACTCGGGGCCAGTTATAACATCTCAATTGCTATTGGTGGATGAAGTAATGCGTGCTGGGCGTAACATGAGGAAGCCAACTTAG 1608 0.4216 MSVRMLNPNAEVLNKSEALHMNINAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKDMQIQNPTAIMIARAAVAQDDISGDGTTSTVLFIGELMRQSERYIDDGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGNEPDKEILKMVARTTVRTKLYEALADQLTNIVVDAVLCIRKPEEAIDLFMVEIMHMRQKFDVDTRLVEGLVLDHGSRHPDMKRRAENCHILTCNVSLEYEKSEINSGFFYSNAEQREAMVIAERRQVDEKVKKIIELKRKVCADNDSSFVVINQKGIDPPSLDMLAREGIIALRRAKRRNMERLVLACGGEAVNSVEDLTPESLGWAGLVYEHVLGEDKYTFVENVKNPFSCTILIKGPNDHTIAQIKDAVRDGLRSVKNTIEDESVVLGAGAFEVAARQHLINEVKKTVQGRAQLGVEAFADALLVVPKTIAENSGLDTQDAIIALTGDHDRGNIVGLNLNTGEPIDPQMEGIFDNYSVKRQIINSGPVITSQLLLVDEVMRAGRNMRKPT 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00717 535 Pfam TCP-1/cpn60 chaperonin family 29 528 IPR002423 GO:0005524
Vivi2g00717 535 Gene3D - 139 408 IPR027410 -
Vivi2g00717 535 FunFam T-complex protein 1 subunit zeta 373 408 - -
Vivi2g00717 535 SUPERFAMILY GroEL apical domain-like 206 381 IPR027409 -
Vivi2g00717 535 Gene3D - 26 525 IPR027413 -
Vivi2g00717 535 FunFam T-complex protein 1 subunit zeta 22 138 - -
Vivi2g00717 535 SUPERFAMILY GroEL-intermediate domain like 146 407 IPR027410 -
Vivi2g00717 535 PRINTS Tailless complex polypeptide 1 (chaperone) signature 31 47 IPR017998 GO:0140662
Vivi2g00717 535 PRINTS Tailless complex polypeptide 1 (chaperone) signature 53 71 IPR017998 GO:0140662
Vivi2g00717 535 PRINTS Tailless complex polypeptide 1 (chaperone) signature 83 102 IPR017998 GO:0140662
Vivi2g00717 535 PRINTS Tailless complex polypeptide 1 (chaperone) signature 376 398 IPR017998 GO:0140662
Vivi2g00717 535 PRINTS Tailless complex polypeptide 1 (chaperone) signature 410 422 IPR017998 GO:0140662
Vivi2g00717 535 FunFam T-complex protein 1 subunit zeta 211 372 - -
Vivi2g00717 535 ProSitePatterns Chaperonins TCP-1 signature 1. 34 46 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Vivi2g00717 535 NCBIfam T-complex protein 1 subunit zeta 2 533 IPR012722 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Vivi2g00717 535 PANTHER CHAPERONIN 15 527 IPR017998 GO:0140662
Vivi2g00717 535 ProSitePatterns Chaperonins TCP-1 signature 2. 55 71 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Vivi2g00717 535 Gene3D GroEL 211 372 IPR027409 -
Vivi2g00717 535 CDD TCP1_zeta 6 529 IPR012722 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Vivi2g00717 535 SUPERFAMILY GroEL equatorial domain-like 11 526 IPR027413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g00717 Vivi-Chr2 20206173 20212956 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00717 K09498 - rvl:131304619 979.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g00717 2 20206173 20212956 Vivi2g00717 2 20206173 20212956 ECH