Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08520 ATGGCTTCCGCTGTTCTATCCAACCGGAACGAACCGAATTGGCCACAGCATAGAAGCAGTGGAGCAGGATTCATGGGGAAAACACCTTTCGCTAACTCTAACCCTAACCCTAACTCCAAACCTAAATTAGGAAACAGCAAGAGAACGCAATCAGCTTCCGATGATGCTTCATCGATCAACCGGAGAACGAATGAGGTGAATCATCACTCTCAACACGTGACGTTCAACGTTGCGTCGTACTCGAAGAATGAGCTGAACGAACTCAAGCATCGTCTTGTTTCGGAGCTCGAGCAGATTCGTAATCTTAAGAATCGGATTGAGTCCGGTGAGTTTCAGCCTCCGAGGAAATCGATGAACAAGAAGATTTCTGGTAACAAGCGCCCTGTTCCGAAGGATTTTAAGCGGTCGAATTCGGAGATTGAGGGTTTGATGAAGGGTTGCGGGCAGGTTTTGCAGAAGCTGATGAAAAACAAACATGCGTTTCACTTCAATGCTCCTGTGGATGTTGTGGGAATGAATCTTCACGATTACCACGATATAATCAAGCGACCGATGGATTTAGGTACAGTGAAGTCGAATCTCTCGAAGAAGGTTTATGCTACGCCAGCTGAATTTGCTTCTGATGTGCGATTAGCATTCAACAATGCACTGACTTATAACCCTGAAGGACACTCTGTGAACACAGCTGCGGAACAGCTTTTAGCTAGGTTTGAACAACTTTATCGTCCATTACATGAGAAATATGAAGAGTGTTTAAAGCAAGTTCACCATTTTGAAGAGGAATTGCAGGCTAGTTCTTGGAACCATGTTGAGCCACCAGAAAGAGTTAAGAAGAAGAGGGAGAATCCGAATCCGATTCCAGTCCCTCCTGTAGAATACCAACATCCAGAGCCTCCTCAGCCCCTTGCAAGTTCTTCTAAACCTCCGGTGGAACAACCTCAAGTAGAACAACAACGTCCATTGATGCAGTCTCCAGCGCGTCCGTTGATGCAGTCTCCAGCGCGTACACGCACGCCGTCGCCAATGCAAGCTACTCCAGTGAAGCCTTTGAAGCAGCCAAAACCTAAAGCCAGGGATCCTAACAAAAGGGATATGAATCTTGAGGAGAAACAGAAATTGGGAATGGGCTTGCAGAGTTTGCCACCGGAGAAAATGGAACAGGTTGTGCAGATTATAAGGAAGAGGAATGGCCATTTAGAGCAGGATGGGGATGAGATTGAGCTTGATATTGAAGCTGTTGACACCGAGACTCTATGGGAACTTGATCGATTAGTCACTAACTGGAAGAAGGCGATGAGCAAGATCAAGCGGCAAGCACTAATGGGCAATGTGAATAACAATGGGACTTCAAACAATGACAATGTGGAAGTACCTGCTAGTGAAAAGGTTGATGAAGTGTCACCTGTTGAGGCAAAGAAGCCTAAGAAAGCTGAAGCAGGGGATGAGGATGTTGACATCGGAGACGATATGCCAATGAGTGTGTTTCCCCCTGTGGAGATTGAGAAAGATAAAGATGTTGTAGTCGGAGGCTACGCAAGTAGTAGTTCGAGTAGCTCGAGCAGTTCAGGCAGTGATTCCTCTTCATCAAGTGATTCAGATTCAGGGAGTTCCTCTGGGAGTGATTCTGAAGCAGACAATGGGCACTTATAG 1650 0.4618 MASAVLSNRNEPNWPQHRSSGAGFMGKTPFANSNPNPNSKPKLGNSKRTQSASDDASSINRRTNEVNHHSQHVTFNVASYSKNELNELKHRLVSELEQIRNLKNRIESGEFQPPRKSMNKKISGNKRPVPKDFKRSNSEIEGLMKGCGQVLQKLMKNKHAFHFNAPVDVVGMNLHDYHDIIKRPMDLGTVKSNLSKKVYATPAEFASDVRLAFNNALTYNPEGHSVNTAAEQLLARFEQLYRPLHEKYEECLKQVHHFEEELQASSWNHVEPPERVKKKRENPNPIPVPPVEYQHPEPPQPLASSSKPPVEQPQVEQQRPLMQSPARPLMQSPARTRTPSPMQATPVKPLKQPKPKARDPNKRDMNLEEKQKLGMGLQSLPPEKMEQVVQIIRKRNGHLEQDGDEIELDIEAVDTETLWELDRLVTNWKKAMSKIKRQALMGNVNNNGTSNNDNVEVPASEKVDEVSPVEAKKPKKAEAGDEDVDIGDDMPMSVFPPVEIEKDKDVVVGGYASSSSSSSSSSGSDSSSSSDSDSGSSSGSDSEADNGHL 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08520 549 Coils Coil 82 105 - -
Vivi1g08520 549 MobiDBLite consensus disorder prediction 26 60 - -
Vivi1g08520 549 MobiDBLite consensus disorder prediction 1 17 - -
Vivi1g08520 549 MobiDBLite consensus disorder prediction 442 549 - -
Vivi1g08520 549 Gene3D - 358 435 IPR038336 -
Vivi1g08520 549 Gene3D - 79 264 IPR036427 GO:0005515
Vivi1g08520 549 MobiDBLite consensus disorder prediction 307 345 - -
Vivi1g08520 549 MobiDBLite consensus disorder prediction 442 457 - -
Vivi1g08520 549 MobiDBLite consensus disorder prediction 1 73 - -
Vivi1g08520 549 MobiDBLite consensus disorder prediction 458 482 - -
Vivi1g08520 549 Pfam Bromodomain 147 230 IPR001487 GO:0005515
Vivi1g08520 549 MobiDBLite consensus disorder prediction 283 306 - -
Vivi1g08520 549 MobiDBLite consensus disorder prediction 109 134 - -
Vivi1g08520 549 PANTHER OSJNBA0053K19.4 PROTEIN 62 542 - -
Vivi1g08520 549 PRINTS Bromodomain signature 208 227 IPR001487 GO:0005515
Vivi1g08520 549 PRINTS Bromodomain signature 158 171 IPR001487 GO:0005515
Vivi1g08520 549 PRINTS Bromodomain signature 174 190 IPR001487 GO:0005515
Vivi1g08520 549 PRINTS Bromodomain signature 190 208 IPR001487 GO:0005515
Vivi1g08520 549 ProSiteProfiles Bromodomain profile. 155 227 IPR001487 GO:0005515
Vivi1g08520 549 MobiDBLite consensus disorder prediction 269 365 - -
Vivi1g08520 549 ProSiteProfiles NET domain profile. 355 436 IPR027353 -
Vivi1g08520 549 SMART bromo_6 136 246 IPR001487 GO:0005515
Vivi1g08520 549 MobiDBLite consensus disorder prediction 510 549 - -
Vivi1g08520 549 Pfam Bromodomain extra-terminal - transcription regulation 365 426 IPR027353 -
Vivi1g08520 549 SUPERFAMILY Bromodomain 126 252 IPR036427 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08520 Vivi-Chr1 243756794 243759164 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08520 - - gmx:100802622 674.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g08520 1 243756794 243759164 Vivi1g08520 1 243756794 243759164 ECH