Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08488 ATGTCATCATTTGCTGATATTGTGCGGCAGAAGGAGTACTGGTGGATGATTCTATCACATGTGTGTGTCTTAGGGTTAATATTTCTTGTGGGGAGTCAAGTTGCATATGCACAAGACTCGTCAACAGACTACGTGAACGCCCACAACGCAGCAAGATCGCAGGTTGGTGTTTCAGATATTGCCTGGGACGATACTGTCGCTGCTTTTGCACAAAACTATGCTAATCAACGTAAGGATTGTCAACTAATCCACTCCGGTGGTGGTGGCCGTTACGGGGAGAATATCGCGGTGAGCTCGGGTGGCATGAGCGGTACAGATGCAGTGAAGTTGTGGGTGGATGAGAAATCCGACTATGATTATGATAGTAATACATGTGCTGCTGGTAAAGTGTGTGGCCATTATACTCAAGTTGTTTGGAGAAACTCAGTTCGACTTGGATGTGCGAAAGTGAGTTGTGACAATGGAGGAACTTTCATTACTTGCAACTATGATCCACCTGGTAACTATAATGGCGAGAAACCATACTAA 528 0.4527 MSSFADIVRQKEYWWMILSHVCVLGLIFLVGSQVAYAQDSSTDYVNAHNAARSQVGVSDIAWDDTVAAFAQNYANQRKDCQLIHSGGGGRYGENIAVSSGGMSGTDAVKLWVDEKSDYDYDSNTCAAGKVCGHYTQVVWRNSVRLGCAKVSCDNGGTFITCNYDPPGNYNGEKPY 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08488 175 SUPERFAMILY PR-1-like 36 175 IPR035940 -
Vivi1g08488 175 Gene3D CAP 39 175 IPR035940 -
Vivi1g08488 175 PRINTS Allergen V5/Tpx-1 family signature 158 171 IPR001283 -
Vivi1g08488 175 PRINTS Allergen V5/Tpx-1 family signature 131 147 IPR001283 -
Vivi1g08488 175 PRINTS Allergen V5/Tpx-1 family signature 107 120 IPR001283 -
Vivi1g08488 175 PRINTS Allergen V5/Tpx-1 family signature 60 78 IPR001283 -
Vivi1g08488 175 ProSitePatterns CRISP family signature 2. 158 169 IPR018244 GO:0005576
Vivi1g08488 175 Pfam Cysteine-rich secretory protein family 45 163 IPR014044 -
Vivi1g08488 175 CDD CAP_PR-1 43 175 - -
Vivi1g08488 175 ProSitePatterns CRISP family signature 1. 132 142 IPR018244 GO:0005576
Vivi1g08488 175 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 43 172 IPR001283 -
Vivi1g08488 175 FunFam Putative pathogenesis-related protein 1 38 175 - -
Vivi1g08488 175 SMART SCP_3 39 171 IPR014044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08488 Vivi-Chr1 242969988 242970612 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08488 K13449 - gmx:100805116 259.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g08488 1 242969988 242970612 Vivi1g08488 1 242969988 242970612 ECH