Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08188 ATGAACTGGAAACTCCTTCGCACCATTGCAATGGACATCAGAACCAGAAACAGATCATACTACACAAGCAGGACCAAGAAACCCAGCCTCTACTCCAAAATCAGCCCCCTCGGAACCCCAACCACAAGCGTCATCCCTCAGCTCGACGATTGGATCTTCAATGGCAACAAAATCACTGTCGGCGAGCTTCAGCGCATCGTTCGTGACCTCCGCAAGCGTAGCAGGTTCACTCAAGCTCTCCAGGTATCTGAGTGGATGAATAAGAATGGTGTGTGCATATTCTCCCCAGTTGAACATGCTGTGCATTTGGATCTTATTGGCAAGGTTCATGGGTTTGTTTCTGCAGAAACCTATTTTGATAGCTTGAAGGAACAAGACAGGAATGAGAAGACATATGGTGCTCTTTTGAATTGTTATGTACGTCAGCGCGACGTCGATAAGTCTCTATCTCATTTGAAGAAAATGAAGGAGTTGGGGTTCGCTACGTCGCCTTTAACGTACAATAATATTATGTGTTTATACACGAATATCGGACGGCATGAGAATGTTGCTGGTGTGTTGTCTGAGATGAAGGAGAATCGTGTTTTACCAGATAACTTTAGTTATAGGATTTGTATAAATTCTTATGGTGTGAGGTCTGATATCGAAGGAATGAAGATGATATTGAAAGAGATGGAGAATCAACCGCACATTGTGATGGATTGGAATACTTATTCTGTTGTGGCGAATTTCTATATAAAAGCTGACCTTTCAAAAGAGGCAATTGATGCGTTAAGGAAATGCGAGGCGAGGTTGGAGGATAAAGATGGAGAGGGTTACAACCATCTTATCTCTCTTTACGCTCGTCTAGGTAAAAAGATTGAGGTTTTAAGGTTATGGGAGATGGAGAAAAATGCTTGCAAGAGGTGTATAAACAGGGATTTTATAACCATGTTAGAATCTCTGGTAAAGCTCGAGGAGTTTGATGAAGCTGAGAAGATACTCAAGGAATGGGAATCCTCTGGTAACTGTTATGATTTGGGAGTTCCTAATGTGGTAATTGTTGGGTACTCTGAAAAAGATTTTCCTGAGAGAGCAGAAGCCATACTTGAAGGTTTACATAACAAGGGAAAGGCCACTAACCCAAACTCTTGGACTCTAGTCGCAAGTCGATACTTGCATAAGGGTGAGATGGAGAAAGCATTTGGGTGCTTGAAAATTGCCATTTCTTTGTATTCGGAAAATAAGAAATGGAAGCCTAACCCTAGGGTGATTGCGGATCTATATAGTTGGATTGGTGATAATGCTTGTGTTGAAGATGCAGAAGCTTTGGTGAGCTTATTGCAAAATGTCCAAAAGAATATACACATGTATCATGCCCTGATGAAGGCTTATGTACGAGCTGATAAAGAAGTTGATGGGGTATTGGACCGCATGAAAAACGATAACATTAAGGAAACCAAAAAAACTATAGAAATTATCAACATGAGGAAGGCGGAAAATTTGTAA 1488 0.4126 MNWKLLRTIAMDIRTRNRSYYTSRTKKPSLYSKISPLGTPTTSVIPQLDDWIFNGNKITVGELQRIVRDLRKRSRFTQALQVSEWMNKNGVCIFSPVEHAVHLDLIGKVHGFVSAETYFDSLKEQDRNEKTYGALLNCYVRQRDVDKSLSHLKKMKELGFATSPLTYNNIMCLYTNIGRHENVAGVLSEMKENRVLPDNFSYRICINSYGVRSDIEGMKMILKEMENQPHIVMDWNTYSVVANFYIKADLSKEAIDALRKCEARLEDKDGEGYNHLISLYARLGKKIEVLRLWEMEKNACKRCINRDFITMLESLVKLEEFDEAEKILKEWESSGNCYDLGVPNVVIVGYSEKDFPERAEAILEGLHNKGKATNPNSWTLVASRYLHKGEMEKAFGCLKIAISLYSENKKWKPNPRVIADLYSWIGDNACVEDAEALVSLLQNVQKNIHMYHALMKAYVRADKEVDGVLDRMKNDNIKETKKTIEIINMRKAENL 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08188 495 Gene3D Tetratricopeptide repeat domain 291 399 IPR011990 GO:0005515
Vivi1g08188 495 Gene3D Tetratricopeptide repeat domain 61 264 IPR011990 GO:0005515
Vivi1g08188 495 Pfam PPR repeat 310 335 IPR002885 -
Vivi1g08188 495 Pfam PPR repeat 131 160 IPR002885 -
Vivi1g08188 495 Pfam PPR repeat 273 294 IPR002885 -
Vivi1g08188 495 NCBIfam pentatricopeptide repeat 131 160 IPR002885 -
Vivi1g08188 495 NCBIfam pentatricopeptide repeat 166 198 IPR002885 -
Vivi1g08188 495 Pfam PPR repeat family 166 209 IPR002885 -
Vivi1g08188 495 SUPERFAMILY TPR-like 117 291 IPR011990 GO:0005515
Vivi1g08188 495 SUPERFAMILY TPR-like 313 411 IPR011990 GO:0005515
Vivi1g08188 495 Gene3D Tetratricopeptide repeat domain 400 494 IPR011990 GO:0005515
Vivi1g08188 495 Pfam Pentatricopeptide repeat domain 442 478 IPR002885 -
Vivi1g08188 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 128 162 IPR002885 -
Vivi1g08188 495 PANTHER OS12G0527900 PROTEIN 23 480 - -
Vivi1g08188 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 163 197 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08188 Vivi-Chr1 232784603 232787517 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08188 29 443 EF-hand Containing Proteins AT1G02150 32.933 3.46e-77 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08188 - - lja:Lj6g3v2043070.1 733.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g08188 1 232784603 232787517 Vivi1g08188 1 232784603 232787517 ECH