Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07794 ATGGAGGACAAAAATTTCGATTCTAAGAATCAGGTGCAAGTTGTAGAAGATTTATCTGCTAGGGTTTCTCGTTTATCCTCTTGTGATCATATATCCAATTCGAATTCTTCTATGGGTGATGAAGTGGATGGTGATTTGAGGAATCATAATCATGTTACTAAAGAGAATTGTGATTCTTTGTCTTCTGTTAGCACTGAGGAGAATAGTATGAATTTATCTAGATTATATCCTGAATTACCTGAGGAATCGTTGGAAAGGACGGAAGAGGATATGGAGGCTTTAGCTGGTATTCAGAATCAGAGGAAGTATTTTTATTATGATGCTCCGCTGAATGAAGATACTGGAGTTTGGATACCGGTTTCGGTTCCACCTATGTTGGAAGACGATCATAAAGAGTGGACCAAAGGTTTTCACTCGAGTGGGGGGTTTTTTCCGGAGGATGATATGGGATGGAATCAATATGTTGGAGGAGATAAGGAGTTGACTATGTGGGAAGTGTTGGTAGAGATTTTACTTGTGGCGAGAGGAAAGGTATCGTCTTTGGCGTCAGGTGATATTCATACATACAGCTTTTCGTGGCTATCGAGTCATGTACTTGAACAAGCTTGGAGAGAGATGGCGCAAACGCTCACTGAGACTAGTTTTGGTAATGTGAAGGAGTTGATAGAAGCAGAACCTCCTAAATGGTTGGCGGATAGTGCTGCTGCTTCTTGTATGCTTTGTGGTGTGAGGTTTCACCCAATTATGTGCTCAAGGCATCATTGTCGGTTTTGTGGAGGAATATTTTGTGGCGAATGTTCTAAAGGACGGAGCTTGATGCCATCAAAGTTCAGAGTTTCTGACCCCCAAAGAGTCTGCGATGTATGCTTTGTCCGAGTTGAGTCTATACAGCCTTATTTGATGGATCATGTAAGTAATGCTTCTCAGTTACCAACCCACGATCTTACAGATCTAAGCACTTTGAGATCATGGGTTAATTTTCCCTGGGGGCAGACCATGGAATATGAAATTTACAAGGCAACTAACACTATCAAGTCTTATAATCAGATAGGTTTAGTAAAGCCCGATAAGACAATTCCAGACGTCATTCTTAGGCAAGCAAAAGGTCTAGCAATTATCACCGTGGCCAAAGTTGGAGTGATGGTTACTTATAATATTGGAACAGGAATTGTGGTTGCGCGTAGGGAAGATGGTTCATGGTCTCCACCATCTGCTGTTTCGACATTCGGAATGGGGTGGGGGGCTCAGGCTGGAGGGGAGTTAACAGACTTCATTATTGTTCTGAGAACAAATGACGCTGTCAAGACATTTAGTGGCAATGCACATCTTTCACTTGGAGCTGGTTTAAGTGCTGCTGTTGGCATTGTTGGAAGGGCAGCTGAAGCTGATATTCGAGCTGGTGATGGTGGCTGTGCTGCTTGTTATACATACAGCTGCAGTAAAGGTGCATTTGTTGGTTGTTCACTTGAAGGAAGTATTGTCACCACTCGCACACAAGAAAATTCTCGTTTTTATGGCAGCCAGTCTTTATCTGCAACAGATATACTTCTTGGCTCCTTGCCTAGGCCACCTGCTGCTGCTATTCTCTACCGTGCTCTTGCAGATTTGTATTTGAAGATTGATGGTTATTGA 1632 0.4259 MEDKNFDSKNQVQVVEDLSARVSRLSSCDHISNSNSSMGDEVDGDLRNHNHVTKENCDSLSSVSTEENSMNLSRLYPELPEESLERTEEDMEALAGIQNQRKYFYYDAPLNEDTGVWIPVSVPPMLEDDHKEWTKGFHSSGGFFPEDDMGWNQYVGGDKELTMWEVLVEILLVARGKVSSLASGDIHTYSFSWLSSHVLEQAWREMAQTLTETSFGNVKELIEAEPPKWLADSAAASCMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLMPSKFRVSDPQRVCDVCFVRVESIQPYLMDHVSNASQLPTHDLTDLSTLRSWVNFPWGQTMEYEIYKATNTIKSYNQIGLVKPDKTIPDVILRQAKGLAIITVAKVGVMVTYNIGTGIVVARREDGSWSPPSAVSTFGMGWGAQAGGELTDFIIVLRTNDAVKTFSGNAHLSLGAGLSAAVGIVGRAAEADIRAGDGGCAACYTYSCSKGAFVGCSLEGSIVTTRTQENSRFYGSQSLSATDILLGSLPRPPAAAILYRALADLYLKIDGY 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07794 543 SMART fyve_4 224 295 IPR000306 GO:0046872
Vivi1g07794 543 FunFam Zinc finger family protein 218 300 - -
Vivi1g07794 543 Pfam FYVE zinc finger 228 294 IPR000306 GO:0046872
Vivi1g07794 543 SUPERFAMILY FYVE/PHD zinc finger 201 293 IPR011011 -
Vivi1g07794 543 CDD SYLF_FYVE 335 536 - -
Vivi1g07794 543 PANTHER SH3YL1 PROTEIN 193 541 - -
Vivi1g07794 543 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 218 303 IPR013083 -
Vivi1g07794 543 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 232 294 IPR017455 -
Vivi1g07794 543 Pfam Las17-binding protein actin regulator 410 534 IPR007461 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07794 Vivi-Chr1 211906491 211910648 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07794 229 312 EF-hand Containing Proteins AT3G14270 35.955 6.51e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07794 K20523 - gmx:100813648 898.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g07794 1 211906491 211910648 Vivi1g07794 1 211906491 211910648 ECH