Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g07020 ATGGCTTTTCAACCCATACTTCTCTTTTCTATTTTACTCTTTATGGTTCCTCCAAACAATGCCTATTGGCCACCTTCACCTGGCTACTGGCCAAGTTCCAAAATCAAGTCTATGAATTTCTACAAAGGCTATAGAAATCTTTGGGGACCTCAACATCAATACATGGATCAACATGCCTTAACAATTTGGCTTGATAGAACCTCCGGCAGTGGATTCAAATCGGTTCGGCCATTTCGATCCGGATACTTTGGTTCTTCAATTAAGCTCCATCCTGGCTACACTGCTGGAGTTATAACAGCTTTTTATCTTTCTAACAGTGAAGCACATCCAGGATTTCATGATGAAGTAGACATTGAGTTTCTAGGGACAACATTTGGAAAGCCTTATACTTTGCAGACAAATGTTTATATAAGAGGAAGTGGTGATGGCAAAATCATAGGAAGAGAAATGAAATTTCACCTATGGTTTGATCCTACCAAAAAATTTCATCACTATGCTATACTCTGGAATCCTAAAGAAATAATATTTTTAGTGGATGATGTGCCTATAAGAAGGTACCCTAGAAAAAGTGATGCAACATTTCCACTAAGACCAATGTGGGTCTATGGTTCAATTTGGGATGCTTCATCATGGGCAACAGAAGATGGAAAATACAAAGCTGATTACAAATACCAACCTTTTGTTGCAAAATACACCAATTTCAAAGCCAATGGTTGCTCGGCTTACGCGTCACGATGGTGCCGTCCGGCCACGGCCTCGCCGTATCGGTCCGGTGGATTGACCCGACAGCAACATTGGGCTATGACTTGGGTTCAAAGACACCACATGGTTTATAACTATTGCCAAGATTCCAAAAGAGATCATAGACTAACACCTGAGTGTTGGGGTTGA 891 0.4097 MAFQPILLFSILLFMVPPNNAYWPPSPGYWPSSKIKSMNFYKGYRNLWGPQHQYMDQHALTIWLDRTSGSGFKSVRPFRSGYFGSSIKLHPGYTAGVITAFYLSNSEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIIGREMKFHLWFDPTKKFHHYAILWNPKEIIFLVDDVPIRRYPRKSDATFPLRPMWVYGSIWDASSWATEDGKYKADYKYQPFVAKYTNFKANGCSAYASRWCRPATASPYRSGGLTRQQHWAMTWVQRHHMVYNYCQDSKRDHRLTPECWG 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g07020 296 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 255 294 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Vivi1g07020 296 SUPERFAMILY Concanavalin A-like lectins/glucanases 62 282 IPR013320 -
Vivi1g07020 296 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 37 294 IPR044791 GO:0004553
Vivi1g07020 296 FunFam Xyloglucan endotransglucosylase/hydrolase 27 295 - -
Vivi1g07020 296 Gene3D - 20 294 - -
Vivi1g07020 296 Pfam Glycosyl hydrolases family 16 42 223 IPR000757 GO:0004553|GO:0005975
Vivi1g07020 296 PIRSF EndGlu_transf 8 296 IPR016455 GO:0010411|GO:0016762|GO:0042546
Vivi1g07020 296 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 9 231 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g07020 Vivi-Chr1 168339973 168341639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g07020 7 294 Glycoside Hydrolase AT3G44990 65.052 1.90e-139 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g07020 K08235 - gmx:100796698 564.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g07020 1 168339973 168341639 Vivi1g07020 1 168339973 168341639 ECH
Vivi6g04136 6 140144034 140146264 Vivi1g07020 1 168339973 168341639 PCT