Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06108 ATGGAAAATCACAAGAACCAAACTGTTTCTATTGAGCCTCAAAGAGAAAGAACAAAACTTCCAAATTTTCTTATATCTGTTAAACTTAAGTATGTGAAACTAGGTTACCATTACTTAATCTCAAAAGCTATGTACCTTTTTCTCATCCCACTTTTTGGTGCAGCTTCTGCTCATTTGTCAACTATCTCTTACCATGATGTTATTCAGCTTTATGAGAATCTCAAGTTCAATCTCATATCTGTGACTCTATGTTCCAGTCTCATGGTGTTTCTTGTCACACTTTACTTCATGAGTCGTCCTAGAGGTGTATACTTGGTAGATTTTGCATGTTATAAGCCAAAACAAGATTATACATGTACTAGAGAGATTTTCATGAATAGGTCTGAGTTGACAGGTACTTTTTCTGATGAGAATTTAGCTTTTCAGAAAAAGATACTAGAGAGATCTGGTTTAGGACAAAGGACTTCTTTGCCACCAGCATTGTTGACTGTTCCACCAAACCCTAGCATGGCTGAAGCAAGGAAAGAAGCTGAGGAGGTTATGTTTGGTGCTATTGATCAGCTTTTGGAGAAAACTGGTGTTAAGGCTAAGGATATTGGGATTTTGGTTGTGAACTGTAGTTTGTTTAATCCTACTCCTTCTCTTTCTGCTATGATTGTGAATCATTATAAGTTGAGAGGGAATGTTCAGAGTTATAATCTTGGTGGTATGGGTTGTAGTGCTGGACTTATCTCTATTGACCTTGCTAAGCAGCTTCTTCAGGTTCATCCAAACTCTTATGCCTTAGTGGTAAGCATGGAGAATATCACACTCAACTGGTATTTTGGCAACAACAGATCAATGTTAGTCTCAAATTGTCTCTTCAGAATGGGAGGATCAGCAGTTCTCCTCTCCAACAAACCATCTGACAGCAAAAGAGCCAAATACCAACTGATCCACACCGTCCGGACTCACAAAGGCGCAGACGATAAGTCCTACGGCTGCGTCTTTCAAGAAGAAGACGAGAAGAGATCAGTTGGTGTATCACTCTCAAAAGATCTAATGGCTGTCGCTGGAGAAGCGCTTAAAACAAACATCACCACACTCGGTCCATTAGTCCTACCTATGTCCGAACAGCTTCTGTTTTTCGCGACTTTGGTCGCAAGAAAAGCCTTCAAGATGAAAATAAAACCCTACATTCCTGATTTTAAGTTGGCTTTCGAGCATTTTTGTATTCATGCTGGTGGAAGAGCTGTTTTGGATGAGTTAGAGAAGAATCTTGATCTTAGTGATTGGCATATGGAGCCATCAAGGATGACACTTTATAGATTTGGTAACACTTCGAGTAGTTCATTATGGTATGAATTGGCTTATACCGAAGCTAAAGGGAGGATCAGAAAAGGTGATAGAACTTGGCAAATTGCATTTGGTTCTGGATTTAAGTGCAATAGTGCTGTGTGGCGTGCATTGAGGACCGTTGATCCGGCTAAGGAGAAGAATCCATGGATGGATGAGATTCATGAGTTTCCTGTTCATGTGCCTAAAGTGGAAACCATTGGGAAAACAAGTTAG 1551 0.3991 MENHKNQTVSIEPQRERTKLPNFLISVKLKYVKLGYHYLISKAMYLFLIPLFGAASAHLSTISYHDVIQLYENLKFNLISVTLCSSLMVFLVTLYFMSRPRGVYLVDFACYKPKQDYTCTREIFMNRSELTGTFSDENLAFQKKILERSGLGQRTSLPPALLTVPPNPSMAEARKEAEEVMFGAIDQLLEKTGVKAKDIGILVVNCSLFNPTPSLSAMIVNHYKLRGNVQSYNLGGMGCSAGLISIDLAKQLLQVHPNSYALVVSMENITLNWYFGNNRSMLVSNCLFRMGGSAVLLSNKPSDSKRAKYQLIHTVRTHKGADDKSYGCVFQEEDEKRSVGVSLSKDLMAVAGEALKTNITTLGPLVLPMSEQLLFFATLVARKAFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLDLSDWHMEPSRMTLYRFGNTSSSSLWYELAYTEAKGRIRKGDRTWQIAFGSGFKCNSAVWRALRTVDPAKEKNPWMDEIHEFPVHVPKVETIGKTS 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06108 516 Gene3D - 106 482 IPR016039 GO:0016746
Vivi1g06108 516 PANTHER 3-KETOACYL-COA SYNTHASE 74 505 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vivi1g06108 516 PIRSF Very_long_ch_3-ktacl-CoA_syn 22 516 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vivi1g06108 516 SUPERFAMILY Thiolase-like 288 484 IPR016039 GO:0016746
Vivi1g06108 516 FunFam 3-ketoacyl-CoA synthase 113 482 - -
Vivi1g06108 516 SUPERFAMILY Thiolase-like 89 306 IPR016039 GO:0016746
Vivi1g06108 516 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 401 481 IPR013747 -
Vivi1g06108 516 CDD CHS_like 85 480 - -
Vivi1g06108 516 Pfam FAE1/Type III polyketide synthase-like protein 95 383 IPR013601 GO:0006633|GO:0016020|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06108 Vivi-Chr1 136060175 136062623 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06108 20 512 Miscellaneous Gene Families AT2G26640 76.673 0.0 813
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06108 K15397 - gmx:100782027 929.858
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06108 1 136060175 136062623 Vivi1g06108 1 136060175 136062623 ECH