Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06089 ATGTCTAATCCTCAGAATGATCCTATTTCGCAAGCTGAGACAACTTGTGGATCGCTTCTGTATGAACTTCAGATAATATGGGATGAAGTTGGGGAGGCTGAGCCTGACAGAGATAGAATGTTGTTTGAGCTTGAACAAGAGTGTCTTGAAGTTTATAGAAGGAAAGTAGATCAGGCGAATCGGTCTAGAGCTCAACTGAGACAGGCAATTGCGGATTGTGAGGCTGAACTTGCAGCCATCTGTTCAGCAATGGGAGAGCGTCCGGTGCATATCAGACAGTCTGATCAAAATGCCGGAAGCCTAAAAGAAGAGCACGCACGAATTCTTCCACAGTTGGAAGAGATGAAAAAGCAGAAGGCTGAGCGTAGAAATCAATTTATAGAAGTTCAAGAGCAGATTCAAAGCCTCTCAATTGAGATTTTTGGCCCCAAAGATATTCCTTCCATTGTAGATGAAACTGATTTGTCTACGAGAAAACTTGAAGAATTGCACAGACAACTAAATGCACTTCAAAGTGAAAAGAGTTCTCGCTTAAAGACGGTTCAGGAGCACCTGTGTACTTTAGAGTCTCTTTGTTTAGTGCTTGGTTTTGACTTTAAGCAGACAGTCCTTGGAATTCATCCCAGTTTAGGAGACTTAGAAGGACCCAAGAGTGTAAGTAATGACACCATCCAGCAATTGGCTGTTGCAATACAACAACTACGGGAAATTAAACTACAGAGAATGCAGAAGCTCCAAGATCTTGCAACAACAATGTTGGAGCTCTGGAACCTGATGGATACACCTATTGAGGAGCAACAAAATTTTCAGAATGTTACTTGTAATATAGCTGCTGCAGAACATGAAATAACTGAACCAAACACCTTATCTGCGGATTTCATCAATTGTGTGGAGGTTGAAGTATCTAGGTTAGAAGAATTAAAATCCAGCAAAATGAAGGAGCTTGTACTAAAGAAGAGAACCGAGCTGGAGGAGGTTTGTCGGAAGACTCATTTGATTCCAGAAATAGATGGTGCAGTCGAATATGCTGTTGAAGCTATAGAATCCGGATCTGTGGACCCTGGTTGTGTGCTTGAACAGTTTGAGCGTCAGGTTGCCCAAGTTAAAGAGGAAGCTTTGGGTCGAAAAGAAATACTTGAAAAGGTTGAGAAGTGGTTAGCAGCATGTGATGAAGAGTCTTGGCTTGAAGAATACAACAGGGATGATAATCGATATAATGCTGGAAGAGGCGCTCATCTCACTCTGAAGCGAGCTGAGAAAGCTCGTGGCTTGGTGAACAAAATTCCAGCAATGGTTGATGTGCTGACTTCAAAAACTATGTCATGGGAAGCGGAGAGAGGTGTACAGTTCACGTATGACGGTATTCGTTTACTCTCAATGCTTGAAGAGTACAACATATTACGGGAAGAGAAAGAGCAAGAACGCCGTAGGCAGCGGGATATGAAGAAGCTTCAGGGACAAATGATAGCGGAACAGGAGGCACTATATGGGTCTAAACCAAGCCCTTCCAAGCCCCAGAGTGTAAAGAAAGGAGCTAGGATGTCAACAGGAGGTGCAGCTAGTAGAAGAGTTTCACTTGGAGGAGCAATGCTTCAGACTCCAAAACCTGATTCCAAAGCTACTGCTAATTCACGTGCCATGAGAAAGACTGACAAAGTGCATCAAATTGAGCAACTAAGTTACCTAGAAGATGGTATTTCCTGTTTATCATCAGCTCGAAGAGGACTGGATATTGCTGGTATTCCTGTTAAAAAATATTCATTTGGTGCTGCTAGTGCTAATGGTACGGAATCCCCTCTAACAAAACAACCTAGTGTTCCTGGCATGGAATCCCCTCTAACAAGGCAACCTTTTTCTCCCATCTCATCTAATGTGTCCTCAAAAGCCAATGTGGTGAATGCTGCAAATGAACATAGTATGCAGAGCGAGAAGTTGCAGAAAGTATTGCCACTCAACAATGTGCCCTTCACTAGTCCCTGCAAGGCAATGACTGTGGTTGATACAGAGAATAGAACTCCTAAGACAATGCCCATTCCTATCCCTGCAACACCTTCAACAGTATCAGTTCCTATGAATATGGCCTTGACTCCAGCTCCTTCATCAGTTTTGATGAATGTGGCCATGACAACTCCAGTTCCCTCGTCAGCTCCTTTTGGATTGGACATGACTCCGGGTCAAGAGATCGAATATTCTTTTGAGGAAAGAAGACTCGCTTATTATATGTTAGCCTGA 2232 0.4306 MSNPQNDPISQAETTCGSLLYELQIIWDEVGEAEPDRDRMLFELEQECLEVYRRKVDQANRSRAQLRQAIADCEAELAAICSAMGERPVHIRQSDQNAGSLKEEHARILPQLEEMKKQKAERRNQFIEVQEQIQSLSIEIFGPKDIPSIVDETDLSTRKLEELHRQLNALQSEKSSRLKTVQEHLCTLESLCLVLGFDFKQTVLGIHPSLGDLEGPKSVSNDTIQQLAVAIQQLREIKLQRMQKLQDLATTMLELWNLMDTPIEEQQNFQNVTCNIAAAEHEITEPNTLSADFINCVEVEVSRLEELKSSKMKELVLKKRTELEEVCRKTHLIPEIDGAVEYAVEAIESGSVDPGCVLEQFERQVAQVKEEALGRKEILEKVEKWLAACDEESWLEEYNRDDNRYNAGRGAHLTLKRAEKARGLVNKIPAMVDVLTSKTMSWEAERGVQFTYDGIRLLSMLEEYNILREEKEQERRRQRDMKKLQGQMIAEQEALYGSKPSPSKPQSVKKGARMSTGGAASRRVSLGGAMLQTPKPDSKATANSRAMRKTDKVHQIEQLSYLEDGISCLSSARRGLDIAGIPVKKYSFGAASANGTESPLTKQPSVPGMESPLTRQPFSPISSNVSSKANVVNAANEHSMQSEKLQKVLPLNNVPFTSPCKAMTVVDTENRTPKTMPIPIPATPSTVSVPMNMALTPAPSSVLMNVAMTTPVPSSAPFGLDMTPGQEIEYSFEERRLAYYMLA 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06089 743 SUPERFAMILY Sec2 N-terminal region 70 194 - -
Vivi1g06089 743 Gene3D - 364 498 - -
Vivi1g06089 743 Coils Coil 153 173 - -
Vivi1g06089 743 Coils Coil 457 487 - -
Vivi1g06089 743 MobiDBLite consensus disorder prediction 492 551 - -
Vivi1g06089 743 Coils Coil 112 132 - -
Vivi1g06089 743 Coils Coil 49 76 - -
Vivi1g06089 743 FunFam 65-kDa microtubule-associated protein 6 365 498 - -
Vivi1g06089 743 PANTHER PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED 11 590 IPR007145 GO:0000226|GO:0008017
Vivi1g06089 743 Pfam Microtubule associated protein (MAP65/ASE1 family) 18 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06089 Vivi-Chr1 135601917 135606869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06089 10 544 EF-hand Containing Proteins AT5G62250 56.960 0.0 538
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06089 K16732 - gmx:100777734 1153.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g05651 2 184701053 184706784 Vivi1g06089 1 135601917 135606869 ECH
Vivi1g06089 1 135601917 135606869 Vivi1g06089 1 135601917 135606869 ECH
Vivi2g05651 2 184701053 184706784 Vivi1g06089 1 135601917 135606869 PCT