Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g06079 ATGTTCAACTTCTTCAAAAGATTGTTATGTCTTATATGTTTTCTCTTGCTATCCTTTGATGTTTCTGTGTGTTTATCTTCTTCTTCACTTGATGACTTCAACTTTTGTTTGGAGAATCACAAAATAAAAAACTTCACTGTTTTTCCTTACAATGATTACTACAAAATTCTCAACTTTTCAATTCAAAACCTTCGGTTTGCAGAACCTACGACACCTAAGCCGATAGCAATTGTACTTCCAGAGAGTTTGAAGCAGCTACAGAAAAGTTTAGCATGCTGCAGAGAATTCTCTTTGGGAATAAGAGTGAGAAGTGGAGGACATAGCTATGAAGGTACTTCTTCTGTTGCGGACGACGGTACTCTTTTTGTTATCATTGACATGATGAATTTAAACCATGTTAAGGTTGATATGGAGACGAAAACAGCGTGGGTTGAAGGCGGTGCAACGTTGGGAGAAACTTATTATTCTATCTCTCAGGCAAGTGATGTATATGGGTTCTCAGCGGGGTCATGTCCGACTGTAGGAGTTGGCGGACATATCGGTGGTGGGGGGTTCGGTCTGTTGTCTAGAAAATACGGACTTGCAGCCGATAACGTGGTGGATGCGTTACTTATCGATGCTGAAGGACGGTTATTGGATCGTAAAACCATGGGAGATGATGTGTTTTGGGCTATTAGAGGAGGAGGAGGTGGTGTTTGGGGAATTGTGTATGCATGGAAAATTCAGTTATTGAAAGTGCCACAAATTGTAACTAGTTGTAGTGTACCTAGAACAGGAGCAAAGAGAGATATTGCTAAATTGCTGAACAAATGGCAACATGTGGCACCAAATTTGGAAGATGATTTCTACTTGTCATGCTTGGTTGCTGCTGCTGCTGGTTTGGCTGAACCTAAAAATGTTGGCGTATCAACAACATTTAATGGTTTTTATCTTGGTCGTAAGTCTAACGCTATATCGATATTGAATCAAGATTTTCCTGAGTTGAATGTTGTAGACGAAGAATGTAGCGAAATGAGTTGGATTGAGTCAATTGTTTTCTTTTCTGGACTAAATGAAGGAGCTTCTGTTTCTGACTTGGGGAATAGGTACTTGGAAGATAAACAATATTTCAAGGCAAAATCAGATTATGTAAGGAGCTATGTTCCACTTTTTGGTATAGAAACTGCATTGGAGTTTCTAGAGAAGGAGCCTAAAGGGTCTGTAGTTTGGGACCCTTATGGTGGGATTATGGATAACATAAGCAGTGATTCCATTGCTTTTCCACATAGAAAAGGAAACCTTTTTTCAATTCAGTACTTGATTTATTGGAAAGAAGAAGACAATGACAAGAGTAAAGATTATATTGATTGGATAAGAGGATTCTATTCTTCTATGATTCCTTTTGTTTCACAGGATCCAAGGGCTGCATATATTAATTACATTGATTTTGATCTTGGAGTAATGGAGGTGATTAGTGTTAATGATGTGGTTAACATTAACCCAAGGGTTTGGGGTGAAAAGTACTTTTTGAGTAACTATGATAGACTTGTGAAAGCCAAGACATTGATTGATCCTAACAATGTTTTCACCAATGAACAAGGCATTCTTCCTAAGACATTTGCCAGCTCCAATGCCAAAGTACTTGGTACACAAATGTTCTAG 1641 0.3845 MFNFFKRLLCLICFLLLSFDVSVCLSSSSLDDFNFCLENHKIKNFTVFPYNDYYKILNFSIQNLRFAEPTTPKPIAIVLPESLKQLQKSLACCREFSLGIRVRSGGHSYEGTSSVADDGTLFVIIDMMNLNHVKVDMETKTAWVEGGATLGETYYSISQASDVYGFSAGSCPTVGVGGHIGGGGFGLLSRKYGLAADNVVDALLIDAEGRLLDRKTMGDDVFWAIRGGGGGVWGIVYAWKIQLLKVPQIVTSCSVPRTGAKRDIAKLLNKWQHVAPNLEDDFYLSCLVAAAAGLAEPKNVGVSTTFNGFYLGRKSNAISILNQDFPELNVVDEECSEMSWIESIVFFSGLNEGASVSDLGNRYLEDKQYFKAKSDYVRSYVPLFGIETALEFLEKEPKGSVVWDPYGGIMDNISSDSIAFPHRKGNLFSIQYLIYWKEEDNDKSKDYIDWIRGFYSSMIPFVSQDPRAAYINYIDFDLGVMEVISVNDVVNINPRVWGEKYFLSNYDRLVKAKTLIDPNNVFTNEQGILPKTFASSNAKVLGTQMF 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g06079 546 Gene3D - 249 465 - -
Vivi1g06079 546 ProSiteProfiles PCMH-type FAD-binding domain profile. 70 246 IPR016166 GO:0071949
Vivi1g06079 546 Pfam Berberine and berberine like 469 528 IPR012951 GO:0016491|GO:0050660
Vivi1g06079 546 PANTHER OS08G0158400 PROTEIN 24 528 - -
Vivi1g06079 546 Gene3D - 32 130 IPR016167 -
Vivi1g06079 546 Pfam FAD binding domain 74 212 IPR006094 GO:0050660
Vivi1g06079 546 Gene3D - 134 530 IPR016169 -
Vivi1g06079 546 SUPERFAMILY FAD-binding/transporter-associated domain-like 67 247 IPR036318 GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g06079 Vivi-Chr1 135448625 135450611 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g06079 57 528 Miscellaneous Gene Families AT1G30760 42.373 1.18e-129 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g06079 - - gmx:100790761 779.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g06079 1 135448625 135450611 Vivi1g06079 1 135448625 135450611 ECH