Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05591 ATGACTTCTTTGAGTAGAGAATTGGTGTTTCTCATACTTCAGTTTCTGGAGGAGGAGAAGTTCAAGGAGTCTGTGCACAAGCTCGAGAAAGAATCAGGGTTCTTTTTCAACATGAAGTACTTTGAGGAAAAAGTGCAGGCTGGTGAATGGGAAGAAGTTGAAAAGTATTTATCAGGGTTTACCAAAGTTGACGATAATAGATACTCAATGAAAATATTCTTTGAAATTAGGAAGCAAAAATACCTGGAAGCTCTTGATCGGCAAGACAAGCCAAAGGCTGTAGAGATATTAGTGGGTGATTTAAAAGTGTTTTCCACCTTCAATGAGGAGCTATACAAAGAAATCACCCAGCTGTTAATTCTTAATAATTTCAGGGAGAACGAGCAACTGTCCAAATACGGTGACACCAAAACTGCTCGAAGTATTATGTTGATAGAGCTAAAAAAACTCATTGAAGCAAATCCTCTTTTCCGTGATAAGCTTGCCTTTCCGACCCTTAAGTCATCAAGACTGAGAACTTTAATCAATCAGAGTTTGAACTGGCAGCACCAACTTTGTAAAAACCCAAGGCCAAACCCAGATATAAAGACTTTATTTACAGATCACACTTGCTCACCTTCTAATGGCCCACTGGCACCTACACCTGTCAATCTTCCAATTTCTGCAGTTGCAAAACCTGCTGCTTACACTTCACTCGGAGTCCATGGTCCCTTCCCTCCTGCCGTTGCAAATGCCAACGCCAATGCTTTGGCTGGTTGGATGGCCAATGCCTCAGCTTCATCATCTGTTCAAGCAGCTGTTGTCACATCGTCAACCATACCAGTCCCTCAGAATCAAGTATCTATCTTGAAACGTCCTAGAACACCTCCGGCAACTCCAGGGATCGTTGACTATCAAAATGCAGATCATGATCAGTTAATGAAAAGGCTTCGTCCCGTTCATTCTGTGGAGGAGGTTTCATATCCTGTGGCTCGACAAACCTCCTGGTCACTGGATGATCTCCCAAGAACAGTGGCTATGACTTTGCATCAAGGATCCTCTGTGACAAGCATGGATTTTCATCCCTTGCACCACACCTTACTTCTTGTTGGTTCTAATAATGGTGAAATAACCCTCTGGGAACTCAGTTTACGGGAAAGGTTGGTCTCAAAGCCGTTCAAGATATGGGATGTGTCGGCGTGCTCATTACCATTTCAGGCAGCTGCAGCCAAGGAGGCTCCTATTTCTGTTAGTCGTGTCACATGGAGCCCTGATGGAAGTTTTATTGGTGTTGCGTTTACTAAACATCTGATTCATTTATATTCATACACCGGCTCAAATGAGCTAACCCAGCGTATAGAGGTTGATGCCCATGTTGGTGGTGTGAATGATTTGTCATTTGCTCTTCCTAATAAACAGCTGTGCATTGTAACTTGTGGAGATGATAAGTTGATAAAGGTGTGGGATGCAAATGGACGAAGACTATTCACTTTTGAGGGGCATGAGGCACCGGTATATTCAATCTGCCCTCATCACAAAGAGAACATTCAGTTCATATTTTCAACAGCCATTGATGGGAAAATAAAGGCCTGGTTATACGATAACATGGGTTCTAGGGTGGACTATGATGCTCCTGGTCATTGGTGTACTACAATGCTTTACAGTGCTGACGGAAGTAGATTGTTTTCTTGTGGGACAAGTAAAGATGGAGAGTCTTTCCTCGTTGAATGGAATGAGAGTGAAGGAGCCATTAAGAGAACATACAATGGATTTAGAAAGAAATCTACTGGTGTTGTGCAGTTTGACACAACCCAAAACCGCTTTTTGGTTGCCGGTGAAGATGGCCAAGTGAAGTTTTGGGACATGGACAATATTAATCCTCTAACAAGCACTGATGCAGATGGTGGATTACAGGGCCTTCCACGCTTGAAATTCAATAAGGAAGGAAATATTCTCGCAGTCACTACTGTGGACAATGGATTCAAAATACTGGCAAATGCTACTGGTCTTAGATCCTTAAGAACAATTGAAACTCCAGCATCATTTGAAGCATTGAGGTCACCTATTGAATCTGCTGCAATCAAGGTATCTGGCTCTTCTACTGTTAATGTTAATCCGGTCAACTGTAAAGTGGAAAGAAGCTCTCCTGTCAGGCCGCCTCCAATTCTTAATGGAGTTGATCCCATGAGTCGAAGTGTAGAGAAATCAAGAACTGTGGAAGATGCATCTGATAGAACTAAACCATGGCAATTGTCTGAAATTCTAGATCCTGTCCAATGTCGGTCAGTTACCTTGCCTGACAACACAGACTCTTTCAGCAAGGTTGTACGACTTCTATATACAAATTCTGCTGTTGGTGTTTTGGCCCTTGGTTCAAATGGCGTTCAGAAGCTTTGGAAATGGGCTCGCAATGAACAGAATCCTACTGGGAAGGCAACTGCCAGTGTTGTTCCACAACGTTGGCAACCTAACAGTGGTCTTCTTATGACTAATGATATTGCGGGTGTCAACCTTGAAGAAGCTGTCCCTTGCATTGCACTCTCAAAAAACGACTCATACGTAATGTCTGCCTGTGGTGGAAAAGTTTCACTGTTTAACATGATGACATTCAAGGTAATGACAACATTCATGTCACCACCTCCTGCCTCTACCTTCCTAGCATTTCATCCCCAAGATAACAACATTATATCCATTGGGATGGAGGATTCAACCATTCATATCTATAATGTTAGAGTCGATGAGGTGAAATCAAAATTGAAGGGTCACCAGAGACGAATTACTGGTTTAGCTTTTTCAACCAATCTTAACATACTGGTTTCATCTGGTGCTGATGCTCACCTGTGTGTATGGAGCATTGATACATGGGAGAAAAGAAAATCAATCCCAATTCAACTACCTGCGGGAAAGCCACCTGTTGGTGATACACGTGTTCAGTTCCATTCTGACCAACTTCGCTTATTGGTAGTCCATGAGACTCAATTGGCAATATATGATGCCTCCAAGATGGAACGCATTCGGCAGTGGATTCCCCAAGATGTTCTGCCTGCTCCCATATCATATGCTGCGTATTCCTGCAACAGTCAGTTAATATTTGCTTCATTCTGTGATGCAAACATTGGGGTTTTTGATGCGGAGAGCTTGAAACTAAGATGTCGTATTGCCCCGTCAATATGCTTGTCATCAGCCGCTTTAAATAGAAGCCAAGCTGTGTATCCTCTTGTGATTGCGGCTCATCCACTAGAACCTAACCAGTTTGCTGTTGGGTTGAGTGATGGGTCTGTCAAAGTGATAGAACCAAGTGAATCAGAGGGTAAGTGGGGATCTTCTCCGCCTATGGACAACGGAGTCTTGAATGGTAAGGCACCATCCTCATCTGCAACTAGCAACCACACTGCCGATCAGGCCCAACGATGA 3393 0.4315 MTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKPKAVEILVGDLKVFSTFNEELYKEITQLLILNNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCSPSNGPLAPTPVNLPISAVAKPAAYTSLGVHGPFPPAVANANANALAGWMANASASSSVQAAVVTSSTIPVPQNQVSILKRPRTPPATPGIVDYQNADHDQLMKRLRPVHSVEEVSYPVARQTSWSLDDLPRTVAMTLHQGSSVTSMDFHPLHHTLLLVGSNNGEITLWELSLRERLVSKPFKIWDVSACSLPFQAAAAKEAPISVSRVTWSPDGSFIGVAFTKHLIHLYSYTGSNELTQRIEVDAHVGGVNDLSFALPNKQLCIVTCGDDKLIKVWDANGRRLFTFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSTGVVQFDTTQNRFLVAGEDGQVKFWDMDNINPLTSTDADGGLQGLPRLKFNKEGNILAVTTVDNGFKILANATGLRSLRTIETPASFEALRSPIESAAIKVSGSSTVNVNPVNCKVERSSPVRPPPILNGVDPMSRSVEKSRTVEDASDRTKPWQLSEILDPVQCRSVTLPDNTDSFSKVVRLLYTNSAVGVLALGSNGVQKLWKWARNEQNPTGKATASVVPQRWQPNSGLLMTNDIAGVNLEEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIISIGMEDSTIHIYNVRVDEVKSKLKGHQRRITGLAFSTNLNILVSSGADAHLCVWSIDTWEKRKSIPIQLPAGKPPVGDTRVQFHSDQLRLLVVHETQLAIYDASKMERIRQWIPQDVLPAPISYAAYSCNSQLIFASFCDANIGVFDAESLKLRCRIAPSICLSSAALNRSQAVYPLVIAAHPLEPNQFAVGLSDGSVKVIEPSESEGKWGSSPPMDNGVLNGKAPSSSATSNHTADQAQR 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05591 1130 SMART ctlh 34 92 IPR006595 -
Vivi1g05591 1130 Pfam WD domain, G-beta repeat 448 482 IPR001680 GO:0005515
Vivi1g05591 1130 Pfam WD domain, G-beta repeat 911 944 IPR001680 GO:0005515
Vivi1g05591 1130 FunFam Topless-related protein 3 731 965 - -
Vivi1g05591 1130 Coils Coil 1130 1130 - -
Vivi1g05591 1130 MobiDBLite consensus disorder prediction 1111 1130 - -
Vivi1g05591 1130 Gene3D - 829 1105 IPR015943 GO:0005515
Vivi1g05591 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 592 623 IPR001680 GO:0005515
Vivi1g05591 1130 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 912 947 - -
Vivi1g05591 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 341 383 IPR001680 GO:0005515
Vivi1g05591 1130 MobiDBLite consensus disorder prediction 705 738 - -
Vivi1g05591 1130 SMART WD40_4 439 482 IPR001680 GO:0005515
Vivi1g05591 1130 SMART WD40_4 484 525 IPR001680 GO:0005515
Vivi1g05591 1130 SMART WD40_4 574 614 IPR001680 GO:0005515
Vivi1g05591 1130 SMART WD40_4 1000 1036 IPR001680 GO:0005515
Vivi1g05591 1130 SMART WD40_4 528 571 IPR001680 GO:0005515
Vivi1g05591 1130 SMART WD40_4 905 944 IPR001680 GO:0005515
Vivi1g05591 1130 SMART WD40_4 391 435 IPR001680 GO:0005515
Vivi1g05591 1130 SMART WD40_4 1057 1091 IPR001680 GO:0005515
Vivi1g05591 1130 SMART WD40_4 862 902 IPR001680 GO:0005515
Vivi1g05591 1130 SMART WD40_4 335 374 IPR001680 GO:0005515
Vivi1g05591 1130 SMART WD40_4 823 859 IPR001680 GO:0005515
Vivi1g05591 1130 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Vivi1g05591 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 912 953 IPR001680 GO:0005515
Vivi1g05591 1130 Gene3D - 295 534 IPR015943 GO:0005515
Vivi1g05591 1130 SUPERFAMILY C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 894 1094 IPR011048 -
Vivi1g05591 1130 Gene3D - 535 677 IPR015943 GO:0005515
Vivi1g05591 1130 SMART Lish 4 36 IPR006594 GO:0005515
Vivi1g05591 1130 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 362 949 IPR011047 -
Vivi1g05591 1130 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Vivi1g05591 1130 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1112 IPR027728 GO:0006355
Vivi1g05591 1130 MobiDBLite consensus disorder prediction 1091 1130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05591 Vivi-Chr1 122794559 122803859 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05591 - - gmx:100793575 2088.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05591 1 122794559 122803859 Vivi1g05591 1 122794559 122803859 ECH
Vivi6g04866 6 152552861 152562221 Vivi1g05591 1 122794559 122803859 PCT