Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g05361 ATGGCCATCAACACTCCCTATCTCAATGCTACAGAAAAGAAACACTGGTGGCTCACAAATCGTAAGATTGTTGAGAAATACATCAAAGACGCACGAACCCTCATTGCAACACAAGAACCCAACGAGATTGCTTCAGCTCTGACTCTACTTGACGCGGCTCTGGCTATCTCTCCCTCCTCAGATCAAGCTCTTGAGCTTAAAGCGAGATCTTTGCTCTATCTGAGAAGATTCAAAGATGTTGCAAATATGCTTCAGGATTACATTCCGAGTCTCAAAATGGCCAACGATGATTCCGGCTCTGTTTCTTCCGATGGCTCTTCTCAACAGCTTTCAAGAGAAGGCGTCAAGTTGTTGTCTTCTTCGGATTCCTCTGATCCAGATCAGAGCTTTTTCAAGTGCTTCTCTGTCTCTGATTTGAAAAAGCGAGTCATGGCTGGTCTCTGCAAAAGCTCTGAAAATGAAGGATATTGGAGATACTTGGTTTTGGGGAAAGCATGTTGCCATTTAGGCCTAATGGAGGATGCTTTGGTTCTTCTTCAAACCGGAAAACGCCTCGCTAGCGCCGCATTTCGCCGCGAGAGCGTGTGTTGGACCGACGATAGTTTCTCTCTATGGAACAAACCGTTCCCCGGCGACGCTATTTCAACAACTCCACCTCGAAGTCCTCTATCAGAATCCGAAACCGTAAACCAACTCATTGCGCACATTAAATTCCTTCTCCGTCGACGCGCTGCCGCAATCGCTGCCATGGACGCTGGACTCCACACGGAAGCTATCCGTCACTTCTCGAAAATCGTCGACGGCCGCCGTGGTGCTCCACAAGGATTCCTCGCTGAATGCTACATGCACAGAGCAACCGCCTTTCGTTCAGCAGGTAGAATCGCTGATTCAATCGCGGATTGTAACAGAACACTCTCACTCGATCCTACATGTATTCAAGCACTTGAATCCAGAGCCTCGATTCTAGAAACAATCCGCTCCTATCAAGATTGTCTTCACGATCTCGAACACTTGAAGCTTCTATACAACACAATTTTACGCGATCGAAAACTCGCTGGACCGTTATGGAAACGTCATAATGTTCGTTACAATGAGATTCCCGGTAAACTATGCACTCTCACCGCGAAAATTCAATTTCTGAAACAGAAAATGGCTTCCGGCGAAACGCGTAATGTGGATTATTATGCTTTGATTGGTCTACGACGCGGTTGTGGTCGATCGGAGTTGCAACGGGCTCATCTTTTGCTTTGCTTGAAGCATAAACCAGAGAAAGCCACATGTTTCATTGAAAGATGTGAACTCGCCGATGAACGCGATCTTGAATCGGTTAAAGATAGAACGAAAATGGCTTCAATGTTGTTGTATAGGCTGCTTCAGAAAGGTTATTCCAGTGTTATGAATTCCATTGCAGAAGATGAAATTGCAGAGAAAGAAAGGAAAATTGCTTTACAGTTACAACAAACTTCTGCAAATGCAAATGCAAATGTTAATGCAAATGCAAATGTAAATGTAAATGCAAATGTACATTCAGTTGAAATGTTGCAACAGATAAGTAGAGATGAAAACATGGAGGAAAAGTTTTTGATGTCTTCGCCGAGCATTGCGAATCCAACGGTGTTTCAAGGAGTGTTTTGCCGTGATCTAACGGTGGTGGGGAACTTGCTTTCTCAAAGGTTTAGTAGTAGGTCAATTCCGGTCAAATACGAAGCGCTTAGTTGTTGA 1722 0.446 MAINTPYLNATEKKHWWLTNRKIVEKYIKDARTLIATQEPNEIASALTLLDAALAISPSSDQALELKARSLLYLRRFKDVANMLQDYIPSLKMANDDSGSVSSDGSSQQLSREGVKLLSSSDSSDPDQSFFKCFSVSDLKKRVMAGLCKSSENEGYWRYLVLGKACCHLGLMEDALVLLQTGKRLASAAFRRESVCWTDDSFSLWNKPFPGDAISTTPPRSPLSESETVNQLIAHIKFLLRRRAAAIAAMDAGLHTEAIRHFSKIVDGRRGAPQGFLAECYMHRATAFRSAGRIADSIADCNRTLSLDPTCIQALESRASILETIRSYQDCLHDLEHLKLLYNTILRDRKLAGPLWKRHNVRYNEIPGKLCTLTAKIQFLKQKMASGETRNVDYYALIGLRRGCGRSELQRAHLLLCLKHKPEKATCFIERCELADERDLESVKDRTKMASMLLYRLLQKGYSSVMNSIAEDEIAEKERKIALQLQQTSANANANVNANANVNVNANVHSVEMLQQISRDENMEEKFLMSSPSIANPTVFQGVFCRDLTVVGNLLSQRFSSRSIPVKYEALSC 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g05361 573 Coils Coil 467 487 - -
Vivi1g05361 573 Gene3D Tetratricopeptide repeat domain 217 352 IPR011990 GO:0005515
Vivi1g05361 573 PANTHER OS01G0273500 PROTEIN 10 573 - -
Vivi1g05361 573 SMART tpr_5 156 189 IPR019734 GO:0005515
Vivi1g05361 573 SMART tpr_5 278 311 IPR019734 GO:0005515
Vivi1g05361 573 SUPERFAMILY TPR-like 244 339 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g05361 Vivi-Chr1 117318942 117321487 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g05361 - - gmx:106797171 776.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g05361 1 117318942 117321487 Vivi1g05361 1 117318942 117321487 ECH
Vivi6g04604 6 148091723 148094323 Vivi1g05361 1 117318942 117321487 PCT