Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04481 ATGGCAAAAACCTCTCACACTTTCTTGCCTCTTATCTTCCTCTCATTCCTCACTCTTGCTGCAGCTTCCCAATCCGGTGGCATAGCAATCTATTGGGGCCAAAACGGCAACGAAGGAACCTTATCCGAAACATGCGCAACCGGAAAATACACCCATGTCATCATAGCATTCCTCAACGTATTCGGCAACGGTCAAACTCCTCAAATGAATCTCGCAGGTCACTGCAATCCATCAACAAATTCATGCACGAAATTCAGCTCAGAAATCAAAGATTGCCAAAGTAAGGGAATCAAAGTCTTACTTTCAATCGGTGGCGGAATCGGAACCTACACTTTATCTTCAATAGAAGATGCAAGAAACGTTTCCACCTTTTTATGGAACACTTTCTTGGGTGGCAAGTCATCTTCAAGACCATTAGGTGATGCTGTTTTAGATGGAATAGATTTCGATATCGAACTCGGTTCAACGCAGAACTATCAACATCTTGCACGTTTTCTTAAAGGGTATTGTAGATTTGGAAAAAGAGTCTATCTTGGTGCAGCTCCTCAATGTCCAATTCCTGATAAATTCTTAGGCACTGCCCTTCAGACGGGTCTTTTCGACTTTGTTTGGGTTCAATTCTATAACAACCCTCCTTGTCAATATAATGGGAACATAACCAATCTTGTGAGTTCTTGGAATCAATGGACAAAGAATGTTCCAGCTAGGAAGATATTCTTGGGGTTGCCGGCGGCTACGGCGGCTGCCGGAAGTGGTTTTATTCCGGCAGATGTGGTGAGTTCTGAGATTTTGCCTGTGATTAAGAAGTCAAGAAAGTATGGAGGGGTGATGCTTTGGTCTAGATTCTATGATTTGCAGACTGGGTATAGCACTTCTATTATTGGAAGCGTGTGA 894 0.4306 MAKTSHTFLPLIFLSFLTLAAASQSGGIAIYWGQNGNEGTLSETCATGKYTHVIIAFLNVFGNGQTPQMNLAGHCNPSTNSCTKFSSEIKDCQSKGIKVLLSIGGGIGTYTLSSIEDARNVSTFLWNTFLGGKSSSRPLGDAVLDGIDFDIELGSTQNYQHLARFLKGYCRFGKRVYLGAAPQCPIPDKFLGTALQTGLFDFVWVQFYNNPPCQYNGNITNLVSSWNQWTKNVPARKIFLGLPAATAAAGSGFIPADVVSSEILPVIKKSRKYGGVMLWSRFYDLQTGYSTSIIGSV 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04481 297 CDD GH18_hevamine_XipI_class_III 26 295 IPR045321 -
Vivi1g04481 297 Pfam Glycosyl hydrolases family 18 28 284 IPR001223 GO:0005975
Vivi1g04481 297 SUPERFAMILY (Trans)glycosidases 23 293 IPR017853 -
Vivi1g04481 297 Gene3D Glycosidases 26 294 - -
Vivi1g04481 297 PANTHER ENDOCHITINASE 12 293 - -
Vivi1g04481 297 FunFam Acidic endochitinase SE2 26 297 - -
Vivi1g04481 297 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 144 152 IPR001579 GO:0004553|GO:0005975
Vivi1g04481 297 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 26 297 IPR001223 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04481 Vivi-Chr1 95379866 95381092 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04481 1 297 Glycoside Hydrolase AT5G24090 62.542 3.67e-143 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04481 K01183 - gmx:100818728 506.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g04481 1 95379866 95381092 Vivi1g04481 1 95379866 95381092 ECH