Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04476 ATGGAGAAGATGCATTACGCCGAGGAGTTAGTAAGAGAGTTTCTCGTGTTCCGAGGATTCACCAACACTCTCGAAGCTTACGAAACGGAATTACGCACCGACGTCGGAAAAGGCTTTCAGGTCGACAAAATTCTTGACCTAATCTTCTCGCTATACGTTCCGAAGTTTCAGATCGATAAACTGGTAGCGCTTCTCGGTTTCTTCAAACACTATCTATCTTCGTCTTTCGAAACTACACTCGTTTCAACTTTCTCTAAGCTGGAAGCTTCTGTTTTACGATTCTACGTCGTTCACGCTTTGCAATCCAACCGGAGGGATAAGGTTGTTGAGTTTTTCACTGTGCATGGTCCTGATTTGTTGCAGAGTTCTCAGGAGGATTGGACTCAATGGTTTGCAATTCCTTATGTGAAGAATCCGCAATTGGATCCGGAATTTCGAATTTTCTTCTCCAAGGAGTGGTATCAGGCCTTGCATCTTTCTGTTAGAAACTTCTTTAGTGAGATCTTCAATGCTACTCGTCTACCTGCTCTACTGAAGATTAGTTCAGAGATGAATGCTACCAACCTACTCAAAAGAGATATCACACAGCTAAATATTAAATTGTCAGAACTTCAGGCTTTACTCAATGAAAAAGAGACACAATTAAGGCAGTTTAAAAGTATGGAAGGAAGTATTAGCTCATCAAGCAATTTGCATGAAGAAAGTACTCATATGTCAAAGGATTCTCCAGAGACTTTTCCACGAGAAGTTCAAACAGATATTGGCCAAGATTTAGTTGTGGAAAACGATGGGGATGTGTCTAGGGAAGAAGACTTTGATGAGGTCAATGTAGAGCACCAGGAGACTTTTTTGGGGCACACCAGTCCAATCAGCCGGTGCCGCTTCTCTGCATCTGGAAACAATATTGCTAGTGCTTCTCTAGATGGAACTGCCAGGATATGGACATACGATGCATCAACTCCGGCGTCTAGAAATGCAACCATATATTGCGGCACTGAAATTCTGTCACTTGACTGGGAATGCAAATCAGACCGCTTGCTTCTGATAGGTACATCTGATGCGTGCATTAAGGCATGGAATGTGGACGCAAAGAGAGTTGTTTGTGACCTTAACACAACTGAAGCATTTCCAAGTGTATTGGACATAAAGTGCAGTCCTGTTGAACCTATTTTTGTGTCCGCAGCAGCATCTGGAGGGTCTAGTTCAAACTATTTTGACAACCTGGGTTTTGCTTCACTCACTGTATGGAACATGAAGACATGGAAGGCCATGACAGTTCTTCCTCTTGGAGAAGATCCACCCGCAATTACTTCTCTATGTTTCAATCATAACGGGAAGATTTTAGCAGCTTCTGCTATTGATGGAATGATTCACATGTTCGACATGTCCGCTGGTCTACAAATCACTGGCTGGCCTGCACATGATTCTTCCATCAGTTCTATTCTTTTTGGACCGGATGAGACTAGCATTTTTAGCTTCGGCTCGGATGGAAAGATTTTTGAGTGGAGCTTGCAAAACCAAGGTCAAATCTTGTGGTCGAGAGACTGTAGTAGGTTTTGTTACCCCGTTAATGATTCAAATTATTATAGACGTGATATGGCATTAGATGCAAATGGGAGGAGACTCTTGGTAACATCCAGTTCAGTTATAGCACCCATATATCAGGTTCAGGATCATTTGACTGGTTGGAGAACACTTTCTCACGGTGCTCCTATTACTGCTGTAGATTGGCATCCGACTTTGCCCATTTTCTTGACTGGATCAGCTGATAACTCTGTCCGAGTAACATCTTTACTATCATAG 1803 0.426 MEKMHYAEELVREFLVFRGFTNTLEAYETELRTDVGKGFQVDKILDLIFSLYVPKFQIDKLVALLGFFKHYLSSSFETTLVSTFSKLEASVLRFYVVHALQSNRRDKVVEFFTVHGPDLLQSSQEDWTQWFAIPYVKNPQLDPEFRIFFSKEWYQALHLSVRNFFSEIFNATRLPALLKISSEMNATNLLKRDITQLNIKLSELQALLNEKETQLRQFKSMEGSISSSSNLHEESTHMSKDSPETFPREVQTDIGQDLVVENDGDVSREEDFDEVNVEHQETFLGHTSPISRCRFSASGNNIASASLDGTARIWTYDASTPASRNATIYCGTEILSLDWECKSDRLLLIGTSDACIKAWNVDAKRVVCDLNTTEAFPSVLDIKCSPVEPIFVSAAASGGSSSNYFDNLGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAIDGMIHMFDMSAGLQITGWPAHDSSISSILFGPDETSIFSFGSDGKIFEWSLQNQGQILWSRDCSRFCYPVNDSNYYRRDMALDANGRRLLVTSSSVIAPIYQVQDHLTGWRTLSHGAPITAVDWHPTLPIFLTGSADNSVRVTSLLS 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04476 600 Gene3D - 400 524 IPR015943 GO:0005515
Vivi1g04476 600 Gene3D - 178 399 IPR015943 GO:0005515
Vivi1g04476 600 SUPERFAMILY WD40 repeat-like 270 595 IPR036322 GO:0005515
Vivi1g04476 600 ProSiteProfiles Trp-Asp (WD) repeats profile. 565 600 IPR001680 GO:0005515
Vivi1g04476 600 Pfam WD domain, G-beta repeat 280 314 IPR001680 GO:0005515
Vivi1g04476 600 Pfam WD domain, G-beta repeat 565 595 IPR001680 GO:0005515
Vivi1g04476 600 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 283 314 - -
Vivi1g04476 600 PANTHER OS05G0299300 PROTEIN 1 598 - -
Vivi1g04476 600 Coils Coil 194 221 - -
Vivi1g04476 600 MobiDBLite consensus disorder prediction 221 247 - -
Vivi1g04476 600 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 565 600 - -
Vivi1g04476 600 SMART WD40_4 321 360 IPR001680 GO:0005515
Vivi1g04476 600 SMART WD40_4 464 503 IPR001680 GO:0005515
Vivi1g04476 600 SMART WD40_4 276 315 IPR001680 GO:0005515
Vivi1g04476 600 SMART WD40_4 420 461 IPR001680 GO:0005515
Vivi1g04476 600 SMART WD40_4 559 597 IPR001680 GO:0005515
Vivi1g04476 600 ProSiteProfiles Trp-Asp (WD) repeats profile. 283 324 IPR001680 GO:0005515
Vivi1g04476 600 ProSiteProfiles Trp-Asp (WD) repeats profile. 471 506 IPR001680 GO:0005515
Vivi1g04476 600 Pfam Anaphase-promoting complex subunit 4 WD40 domain 430 483 IPR024977 -
Vivi1g04476 600 Gene3D - 525 600 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04476 Vivi-Chr1 95287017 95293247 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04476 K24760 - gmx:100795332 992.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g04476 1 95287017 95293247 Vivi1g04476 1 95287017 95293247 ECH