Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04434 ATGACACGTAATTTTAGTCATAATCCGATTTCTCTCTATATATACCTCAACTATACATCTGTTTTCCTCACAAGTTCCATATATCATCAAAACATGAAGATTTCAAGATTTGAAAATTTCTATGTTATTGGTGTGATTTCTATAGTTTTGATACTGGGATCAGTAGTAGAAAGCGGAAAACCAAGTAGCGAATTAAACGATTTCAATTACCCTGCAACCAATTGCAGAAAACACAGTGCAGTTTTGACAGATTTTGGTGGTGTTGGTGATGGAAAAACCTCTAACACAAAGGCTTTTAATTCAGCAATAACTAACCTAAGCCAATATGCAAATGATGGCGGTGCACAACTTATTGTTCCACCAGGTAAATGGTTAACTGGAAGCTTCAACCTCACAAGCCATTTCACTCTTTTTCTCCAAAAAGACGCTGTCATTCTTGCATCTCAGGATGAATCAGAATGGCCCCAACTTCCTGTTTTACCATCTTACGGAAAAGGCCGAGATGGTGTAATTACTGATAGATGGTCTAGCAGTCTCATTTTTGGAACTAATCTTACCGATGTTGTAATTACCGGTAACAACGGAACAATTGATGGACAAGGATCTTATTGGTGGAACAAGTTCAACAAGCATGAATTGAAAATCACTAGACCTAACATGATTGAACTCATGTACTCTAATCAAATCCAAATATCTAATCTTACTTTGGTTAATTCCCCAGCTTGGTTTGTCCATCCAATTTACAGCAGTGACATCATTATAAATGGACTCACCATCCTTGCACCAATTGACTCTCCAAACACAGATGGCATAGACCCTGATTCATGTACAAATGTTAGGATTGAAGACAACTACATTGTCTCTGGTGATGATTGTATTGCAATAAAAAGTGGAATTGATGAGTATGGGATCAAAGTTGGAAAGCCATCTCAACAAATTATCATAAGAAGGCTAACATGTATATCACCTTATAGTGCTATGGTTGCATTAGGGAGTGAAATGTCAGGTGGAATCCAAGATGTAAGAGTTGAAGACGTAACTGCTATCAACACTGAATCAGCTGTTAGAATCAAAACAGCCGTCGGTAGAGGCGCATTTGTGAAGGACATTTTTGTTAAAGGAATGAACTTGAAGACAATGAAATATGTGTTTTGGATGACAGGTGATTATAAATCACACCCTGATAAAGGATATGACTCAAAAGCATTGCCTAAAATTAGTGGAATTAATTATAGAGATGTTACTGCAAAGAATGTGACATATGCGGCGAAACTAGAAGGGATTTCAAATGACCCTTTTACAGGAATATGTATTTCTAATGCGACTATTGAAATGAGTGCACAGAAGAAGCTTCCATGGAATTGCACAGACGTTGCTGGAGTTACAAGTAATGTGAGCCCTAAACCTTGTGAATTACTGCCAGGGAAAAAGAAGTTGGACTGTCCTTTTCCAATTGACAAACTGCCCATTGAAAATGTTCAGTTCAAGATCTGTTCCTACCAAAGTAGTGTCTTCTAA 1518 0.3742 MTRNFSHNPISLYIYLNYTSVFLTSSIYHQNMKISRFENFYVIGVISIVLILGSVVESGKPSSELNDFNYPATNCRKHSAVLTDFGGVGDGKTSNTKAFNSAITNLSQYANDGGAQLIVPPGKWLTGSFNLTSHFTLFLQKDAVILASQDESEWPQLPVLPSYGKGRDGVITDRWSSSLIFGTNLTDVVITGNNGTIDGQGSYWWNKFNKHELKITRPNMIELMYSNQIQISNLTLVNSPAWFVHPIYSSDIIINGLTILAPIDSPNTDGIDPDSCTNVRIEDNYIVSGDDCIAIKSGIDEYGIKVGKPSQQIIIRRLTCISPYSAMVALGSEMSGGIQDVRVEDVTAINTESAVRIKTAVGRGAFVKDIFVKGMNLKTMKYVFWMTGDYKSHPDKGYDSKALPKISGINYRDVTAKNVTYAAKLEGISNDPFTGICISNATIEMSAQKKLPWNCTDVAGVTSNVSPKPCELLPGKKKLDCPFPIDKLPIENVQFKICSYQSSVF 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04434 505 SMART pbh1 338 359 IPR006626 -
Vivi1g04434 505 SMART pbh1 249 275 IPR006626 -
Vivi1g04434 505 SMART pbh1 276 297 IPR006626 -
Vivi1g04434 505 SMART pbh1 406 440 IPR006626 -
Vivi1g04434 505 Gene3D - 62 466 IPR012334 -
Vivi1g04434 505 SUPERFAMILY Pectin lyase-like 75 473 IPR011050 -
Vivi1g04434 505 PANTHER PECTIN LYASE-RELATED 50 491 - -
Vivi1g04434 505 Pfam Glycosyl hydrolases family 28 178 459 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04434 Vivi-Chr1 94510004 94512216 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04434 45 498 Glycoside Hydrolase AT3G48950 66.739 0.0 643
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04434 - - tpra:123913064 741.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g04434 1 94510004 94512216 Vivi1g04434 1 94510004 94512216 ECH