Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04425 ATGAAGAGCCACACAATGTTCCTAATTAGATTCATTTTACTTTTGATGTTTCTTGGATCTCTAACAGTTTGGATCTTGTTGCCCACAAAGATCTACCGCAACACATGGACTGTCACCCTAGAAAACAAGCTCAATTCTACATACTTCAGAGAGCAAGGGGTAAATCTCCTGCTTTTTACATTCCCTATGATGTTCATTGGAGCTCTTGGTAGTATTTATCTCCATCTTAATCAAGAAAAAATAACAAAAAACTTACCCTCCACAAGTGGTGGTGCTCTAAAAAGATGTTTATGTTTCCTGAGACGTCCATTCCTGGTGATGTCTCCATTTGGAATAGTTTCAGCTCTGGAGCTTCTCTTTACATTCATGTTTGTTGCACTTCTGATATGGTCCCTTGCCAATTACTTATATATTAGTTTTGGTCACCTCCATATGCACAAAGTAGGAGAGAAAGTATGGGAAGCAAAGTTTAGGAGTGTATCATTGAGACTTGGTTACATAGGAAACATATGTTGGGCATTTTTGTTCTTTCCAGTCACAAGAGGCTCTTCAATTCTGCGTCTGGTTGGACTCACATCTGAGTCAAGCATCAAATACCATATATGGCTTGGACATTTATCGATGGTTCTTTTTGCTGCTCATACCGTTGGTTTTATCATCTATTGGGCCATCACCAATCAAATGGTTGAGATGCTAGAGTGGAGCAAAACTTATGTATCCAATGTTGCCGGGGAGATTGCAAGTTTAATAGCACTAGTAATGTGGATAACAAGTATTTCACGCATAAGGCGTAAGATGTATGAAGTATTCTTCTACACTCACCATCTCTACATTCTATATATCTTATTCTATGCAATCCATGTTGGAGTTGAATACATGTGCATGATTGCTCCTGGGATTTTTCTATTCCTCATTGATAGACATCTTAGATTCTTACAATCTCGACAAAATGCCCGGTTATTGTCAGCTCGCATTTTGCCTTGTGATGCACTTGAGCTCAATTTCTCCAAGAACCCTAGTTTATACTATAACCCCACAAGCTTGGTATTCATAAATGTTCCAACGGTTTCCAAGCTGCAATGGCACCCTTTTACGGTGACTTCTAGCTGTAATATGGAAAGTAATAATCTGAGTGTTACCATAAAAAATGTGGGTAGCTGGTCAAACAAGCTTTATCAACAACTTTCTTCTTCATCTTTGGATCATCTTAATGTTTCAGTCGAAGGACCTTATGGACCTCATACTAAACAATTTCTAAGGCATGAACAAATTGTGATGGTAAGTGGTGGAAGTGGCATAACTCCCTTCATATCTATAATCCGAGATCTCATATTTCAAAGCCAACAACAACAATTCCAAGCTCCAAAACTCCTACTTGTTTGTATTTTCAAGAATTATGTTGATCTAACAATGTTAGATCTTATGCTTCCAGCTTCTGGTTCAACAACTCAAATCGCAAACCTTCATTTACAAATCGAAGCTTACATCACAAGAGAAAAACAAGAACCTTCAATCGAAACTCAAAAACCTATTCAATTAATATGGTTTAAGCCAAACCTCTCAGATTCTCCTATCTCACTTGTATTAGGCCCAAATAACTTGTTATGGCTTAGTGCCGTAATCACATCATCTTTCATCATGTTTCTCCTATTTTTAGGAATTTTAACTCGTTACTATATTTATCCGATGGAAAAGAACTCAAGTGAAGTGTATAATTGGACATTCAAGGTTATGTGGTACATGTTTCTAATATGTGCATGCATATGTGTATGTTCTAGTGTTGCTTTTCTTTGGTGGAAAAGACACAACACTTTAGAAAATAAGCAAATAAATGTAGAAGTTTCAACACCAACAAGAGAACTTGAAAGCATTCCTCATCAATCTTTAGTGGAAGCTACCAATGTACATTTTGGTGCAAGACCTGATCTCAAAAAAATTATGTTTGAGTTTGAATGCAAAGATGTTGGAGTCATGGTATGTGGTCCAAGAAAATTGAGACATGAAGTTGCCAAAATTTGTGCTTCTGGTTTGGCTGATAATCTTCACTTTGAATCCATCAGCTTTAATTGGTGA 2073 0.3705 MKSHTMFLIRFILLLMFLGSLTVWILLPTKIYRNTWTVTLENKLNSTYFREQGVNLLLFTFPMMFIGALGSIYLHLNQEKITKNLPSTSGGALKRCLCFLRRPFLVMSPFGIVSALELLFTFMFVALLIWSLANYLYISFGHLHMHKVGEKVWEAKFRSVSLRLGYIGNICWAFLFFPVTRGSSILRLVGLTSESSIKYHIWLGHLSMVLFAAHTVGFIIYWAITNQMVEMLEWSKTYVSNVAGEIASLIALVMWITSISRIRRKMYEVFFYTHHLYILYILFYAIHVGVEYMCMIAPGIFLFLIDRHLRFLQSRQNARLLSARILPCDALELNFSKNPSLYYNPTSLVFINVPTVSKLQWHPFTVTSSCNMESNNLSVTIKNVGSWSNKLYQQLSSSSLDHLNVSVEGPYGPHTKQFLRHEQIVMVSGGSGITPFISIIRDLIFQSQQQQFQAPKLLLVCIFKNYVDLTMLDLMLPASGSTTQIANLHLQIEAYITREKQEPSIETQKPIQLIWFKPNLSDSPISLVLGPNNLLWLSAVITSSFIMFLLFLGILTRYYIYPMEKNSSEVYNWTFKVMWYMFLICACICVCSSVAFLWWKRHNTLENKQINVEVSTPTRELESIPHQSLVEATNVHFGARPDLKKIMFEFECKDVGVMVCGPRKLRHEVAKICASGLADNLHFESISFNW 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04425 690 PRINTS Cytochrome B-245 heavy chain signature 242 265 IPR000778 GO:0016020|GO:0016491
Vivi1g04425 690 PRINTS Cytochrome B-245 heavy chain signature 267 287 IPR000778 GO:0016020|GO:0016491
Vivi1g04425 690 PANTHER NADPH OXIDASE 30 688 - -
Vivi1g04425 690 SFLD Ferric Reductase Domain 28 690 - -
Vivi1g04425 690 CDD NOX_Duox_like_FAD_NADP 320 498 - -
Vivi1g04425 690 Pfam Ferric reductase like transmembrane component 165 283 IPR013130 -
Vivi1g04425 690 Pfam Ferric reductase NAD binding domain 421 674 IPR013121 GO:0016491
Vivi1g04425 690 Pfam FAD-binding domain 317 414 IPR013112 GO:0016491
Vivi1g04425 690 Gene3D - 597 689 IPR039261 -
Vivi1g04425 690 Gene3D - 405 531 IPR039261 -
Vivi1g04425 690 SFLD Ferric reductase subgroup (FRE) 7 690 - -
Vivi1g04425 690 FunFam Ferric reduction oxidase 3 410 528 - -
Vivi1g04425 690 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 313 417 IPR017927 GO:0016491
Vivi1g04425 690 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 405 479 IPR039261 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04425 Vivi-Chr1 94335043 94341052 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04425 8 690 Miscellaneous Gene Families AT5G23980 56.695 0.0 807
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04425 K00521 - gmx:112998154 1081.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g04425 1 94335043 94341052 Vivi1g04425 1 94335043 94341052 ECH