Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04424 ATGATGATGAAGAGCCACACAATATTACTATTTAGAATCATTTTTCTTTTGATGTTTCTTGGATGGCTAACAGTTTGGATATTGTATCCCACTAAGATCTACCATAAGACATGGATTGTCAACCTAGAAAACAAGCTCGATTCTACATATTTTAGAGAGCAAGGGGTAAATCTCCTGCTTTTTACATTCCCTATCATGTTCATTGGAGCTCTTGGTGGTATTTATCTTCATCTTCATCATCATCAGGAAAAAATAACACAAAACTTACCCTCCACAAGTGATGGTGCTCTAAAAAGATGTTTATGTTTCCTGAGACGTCCAATCCTGGTGATCTCCCCACTTGGAATAGTTTCAGCTATGGAGCTTCTTTTTACATTCATGTTTGTTGCACTTTTGATATGGTCCTTTTCCAATTACTTATATAGAAGTTTTGGTCACCTCCATATGGACAAACAAGGCGAGAAAGTATGGGAAGCAAAGCTTAGGAGTGTATCATTGAGACTTGGTTACATAGGAAACATATGTTGGGCATTTTTGTTCTTTCCAGTCACAAGAGGGTCTTCAATTTTGCGTCTGGTTGGACTCACTTCTGAGTCAAGCATCAAATACCATATATGGCTTGGACATTTATCGATGGTTCTTTTTGCTGCTCATACCATTGGTTTTATCATCTATTGGGCCATCACCAATCAAATGATTGAGATGCTAGAGTGGAGCAAAACTTATGTATCCAATGTGGCAGGAGAGATTGCAAGTTTAATAGCACTAGCAATATGGATAACAAGTATTTCACGCGTAAGGCGTAAAATGTATGAAGTTTTCCTCTATACTCACCATCTCTACATACTCTATATCTTGTTCTATGCAATCCATGTTGGAGTTGAATATATGTGTATGATTGCTCCTGGAGTTTTTCTCTTCCTCATTGATAGAAATCTTAGATTCTTACAATCTCACCAAAATACTCAGTTATTATCAGCTCGCATTTTGCCTCGTGATGCAGTCGAGCTCAATTTCGCTAAGAATCCTAGTTTATACTATAACCCCACAAGCTTGGTGTTCATAAATGTTCCAAAGGTTTCCAAGCTGCAATGGCACCCTTTTACAGTGACTTCTAGTTGTAATATGGAAACTAATAATCTTAGTGTTACCATAAAAAATGTGGGTAGCTGGTCAAACAAGCTTTATCAACAACTTTCTTCTTCATCTTTGGATCATCTTAATGTTTCAGTTGAAGGACCCTATGGACCTCACACTAAACAATTTCTAAGGCATGAACAAATTGTGATGGTAAGTGGTGGAAGTGGCATAACTCCCTTCATATCTATAATCCGAGATCTCGTGTTTCAAAGCCAACATCAAGAGTTCCAAATTCCAAAACTCCTACTTGTTTGTATTTTCAAGAATTATGTTGATCTAACAATGTTAGATCTTATACTTCCGGCTTCTGGTCCAACAACTCAAATCTTAAACCTTCATTTACAAATCGAAGCTTACATCACCCGAGAGAAACAAGAACCTTCAACAGAAACTCACAAACCTATCCAAACAATATGGTTTAAGCCAAACCTCTCAGATTTTCCTATCTCACTTATATTAGGCCCAAATAACTGGTTATGGCTTAGTGCTATAATCACATCATCTTTCATCATGTTTCTTATTCTATTAGGAATTTTAACTCGTTACTATATTTATCCTACGGAAAAGAACTCAAGTGAAGTGTATAATTGGACATTCAAGGTTATGTGGTATATGTTTCTTCTTTGTGCATGCATATGTGTATGTTCTAGTGTTGTTTTTCTATGGGGGAAGAGACATGAAACTTTAGAAAATAAGCAAATAAATGTAGAAGTTTCAACACCAACAAGAGAACTTGAAAGCATTCCTCATCAATCTTTAGTGGAATCTACCAATGTACATTTTGGTGCAAGACCTGATCTCAAAAAAATTATGTTTGAGTTTGAATGCAAAGATGTTGGAGTCATGGTATGTGGTCCAAGAAAATTGAGACATGAAGTTGCCAAAATTTGTACTTCTAGTTTGGCTGATAATCTTCACTTTGAATCCATCAGCTTTGGTTGGTGA 2085 0.3635 MMMKSHTILLFRIIFLLMFLGWLTVWILYPTKIYHKTWIVNLENKLDSTYFREQGVNLLLFTFPIMFIGALGGIYLHLHHHQEKITQNLPSTSDGALKRCLCFLRRPILVISPLGIVSAMELLFTFMFVALLIWSFSNYLYRSFGHLHMDKQGEKVWEAKLRSVSLRLGYIGNICWAFLFFPVTRGSSILRLVGLTSESSIKYHIWLGHLSMVLFAAHTIGFIIYWAITNQMIEMLEWSKTYVSNVAGEIASLIALAIWITSISRVRRKMYEVFLYTHHLYILYILFYAIHVGVEYMCMIAPGVFLFLIDRNLRFLQSHQNTQLLSARILPRDAVELNFAKNPSLYYNPTSLVFINVPKVSKLQWHPFTVTSSCNMETNNLSVTIKNVGSWSNKLYQQLSSSSLDHLNVSVEGPYGPHTKQFLRHEQIVMVSGGSGITPFISIIRDLVFQSQHQEFQIPKLLLVCIFKNYVDLTMLDLILPASGPTTQILNLHLQIEAYITREKQEPSTETHKPIQTIWFKPNLSDFPISLILGPNNWLWLSAIITSSFIMFLILLGILTRYYIYPTEKNSSEVYNWTFKVMWYMFLLCACICVCSSVVFLWGKRHETLENKQINVEVSTPTRELESIPHQSLVESTNVHFGARPDLKKIMFEFECKDVGVMVCGPRKLRHEVAKICTSSLADNLHFESISFGW 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04424 694 Gene3D - 596 692 IPR039261 -
Vivi1g04424 694 Pfam FAD-binding domain 321 418 IPR013112 GO:0016491
Vivi1g04424 694 Gene3D - 409 534 IPR039261 -
Vivi1g04424 694 CDD NOX_Duox_like_FAD_NADP 324 502 - -
Vivi1g04424 694 Pfam Ferric reductase NAD binding domain 425 677 IPR013121 GO:0016491
Vivi1g04424 694 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 311 421 IPR017927 GO:0016491
Vivi1g04424 694 PRINTS Cytochrome B-245 heavy chain signature 271 291 IPR000778 GO:0016020|GO:0016491
Vivi1g04424 694 PRINTS Cytochrome B-245 heavy chain signature 246 269 IPR000778 GO:0016020|GO:0016491
Vivi1g04424 694 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 409 482 IPR039261 -
Vivi1g04424 694 SFLD Ferric reductase subgroup (FRE) 14 694 - -
Vivi1g04424 694 PANTHER NADPH OXIDASE 17 692 - -
Vivi1g04424 694 FunFam Ferric reduction oxidase 3 414 532 - -
Vivi1g04424 694 SFLD Ferric Reductase Domain 33 694 - -
Vivi1g04424 694 Pfam Ferric reductase like transmembrane component 169 287 IPR013130 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04424 Vivi-Chr1 94308706 94324272 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04424 10 694 Miscellaneous Gene Families AT5G23980 54.972 0.0 784
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04424 K00521 - gmx:112998154 1046.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g04424 1 94308706 94324272 Vivi1g04424 1 94308706 94324272 ECH