Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04373 ATGGAAAGATATTACAAATGTGTTGTACTGTTTTTGGTTATAATTCCACAATCATGCTTGTGTGCTAATTCAAATGTCCCTTGCATACAACAAGAGATACAAGCTCTTCTTGATTTCAAAGCGTCCATTGCACAACACTCATCAAACAAACTTTCATCGTGGAAAGGCTCTCACTGTTGCCAATGGGAAGGCATTGGCTGTGACAATGTCACTGGACATGTTGTCAAACTTGATCTCAGAAATCCTTGTTACCCACCAAATTGGCGGCAACACTACCTTCAATATATTCCCTGTTTGCAAGTAATTGCTCCAAATGTCAGCTCGTCTTTGCTACAATTGGAACACTTGACTTATTTGGACTTGACAGGAAATGATTTTGGTGAGAGTTTAATTCCTATGTTCATCGGTTCCATGGGACGCCTTGAGCACCTCTCTCTCTCAGACGCTGAACTTAGCGGAAACATTCCCAACAGTTTCGGAAATCTTAAAAGCCTACAATTTCTTGATATCAGCTCTAATGACAATTTCAGTTACTCATTTCAAATAAGACAAGACACCAGTTGGATATCTAAACTTCATTCACTCAAACACCTTGACTTGAGTTCTGTTCCCATCAATGACCCACACTACTTGTTTCAGGTACTCAATTTACTTCCATCCTTGTCGCATCTTTCCTTGTATGATTGCCAACTTGACAATTCACTCATACCTCATTATGCTTTTCAAAACATGACAAATCTTGTCTATCTAGATCTCTCATTTAATAATATGCTTTCTGGTCCAATTCCTGAGGTTTTTCAAAACATGACTTCCATTGAATCACTCTATCTTTCTCGAAACAATATCAATTCTATTCCATTATGGTTTAGTGAATTAGACAAACTTACCCTTCTTGACCTTTCTGGCAATGGGCTTCGTGGTCAAATACCTTCTTATGCTTTCACAAACTTGTCATCACTTGTGCATCTTGATCTCTCCTATAACCAACTTGATTCAGTTTCGTCATTGTCATTTGCCAACCTAAAAAAGTTTGCGTATCTTGATCTTTCATTCAATGAGTTCTATGGTCCAATTCCTGAGGTTTTTCAAAACATGACTTCCATTGAATCACTCCATCTTTCTGGAAACCATTTCACATTAGTTCCATCTTGGTTTTGCAACTTTCAAAAACTTACATATCTTGATCTTTCTATGAATGGCATCCATGGTCCAATTCCTGAAGGTCTTCGAAACTTGACTTCCATTAAATTCCTAGACCTTAGGGATAATAGTTTAACTTCAATTCCATCGTGGTTTGTTGAGTTGAAGAGACTTGTGTACCTAGATCTTAGTTGGAATCAAATTACACTTAAAGAATACTTTCTATCATCCATCATAAATTCCATGTGCCGCCTAAAAACATTGATTTTATCAGGAAACCAGCTTTACACAGAATCAATGGAACACTTTGAAACATCTAAATGTACTAAATATGATTTGGAGTACTTGGAATTAAGGCATAATGATATCAGTGGCCACCTGCCAACTTGGTTGGAGAAACTTGAAAATCTAAAATACCTTGATTTTACCTCGAGTTTTCTCCATGGACCTATCCCTGTGTCAATTGGAAAGTTGTCAAAACTGCATCAGCTATCTCTATCCGATAATACATTTGAAGGGCTTATTCCTAAAAGTATAGGTCAACTTGTCTATTTAACTAACTTAGATCTTTCTTCTAATAAGTTTCATGGTTCAGTTCCTCAAAGCCTATGGAGACTGACAAATCTAGAGTTTCTTGATCTTTCAAACAATTCTTTTAATGGGTTCATTCCGGAAAGTATTGGTCAACTTGGCTATTTAACTCACTTAGATCTTTCTTCCAATAAGTTTGATGGTTCAATTCCTCAAAACCTATGGAAACTGACAAATCTAAAGTTTCTTGATCTTTCAAACAATTCTTTTAATGGGGTCATTCCGGAAAGTATTGGTCAACTTGTCTTTTTAACTAAATTAGATCTTTCTTCGAATAAGTTTCATGGTTCAATTCCTCAAAGTCTATGGAAACTTGCAAATTTAGAGTCTATTGATCTTTCAAACAATTATTTTAATGGAATCATTTCTATAAGTCTTTGTCAACTTGTCAATTTGGATTCTTTAGATATTTCTTCAAACAAGTTGGATGGAATGATCTCTATGGAAAAAGGATGTCATTTAAAGTTGCAGTATTTGAATCTCTCTCATAATCAAATGACTGGTTCAATACCAAAAAACATTGGCCATATAATGTTGTATTTGGGAAACTTGTTTCTAGGAAACAACCACATAAATGGTTCAATCCCAATATCTATGTGCCAAATGCAACTTACCAATCTTGATCTTTCAAAGAATAATTTATCTGGTGAAATTCCAAATTGTTGGGAGGATAGCCAAGAGTTGTCAGAGATAAATTTGTCATCTAACAAACTAACAGGAGAGTTCCCAAGCTCATTTGGGAATCTTCCCTTCCTGTTTTGGTTGCATTTGAACAATAATAGTCTTCAAGGAGAGATTCCAACGTCGTTTAGAAATATGAAGCGATTGTTGCTTTTGGATCTTGGTGAGAATCAACTTTCTGGAAGTATACCATCATCATGGACAGAAAACACATTTCCTTTAGTGCAAATTATTCGACTACCGCATAACACGTTGAGTGGAAGCATTCCTTCACAGTTATGTCAACTCAAATCACTAAAAATTTTGGACCTCTCCAGAAACAAATTACAAGGTTCGATACCTCGATGTATAGGAAATCTGGAAGGAATGAAATTTGAAAAATCAATATCATCACCGATTCACATGCAGTCATACAAGTTAACATCATTGCCTCCACTAGCACCTCCAGCACCGTCTCAAGTATTTTCTGCAGATGCTCCTTCTATGGAGTGGCCCACTCAAGATCTCACAGAAAGGATGAAAGGAATGGAACTTGAATATACCAAAATCTTAAAACTTGTAGTCAACATTGACTTGTCAGAAAATAGATTGGTTGGATTTATTCCTAAAGAAATCGCATGGCTTACAGGATTGCATGGCTTGAACTTATCAAGAAATCAATTGAAAGGAGAGATTCCTGGGTTAATAGGAGACATGAAATCACTAGAATCATTGGACATGTCTCATAACCAACTTTCTGGAAAAATTCCCAATACCATGTCTGCTATAACTTCATTGAGTTTTTTAAACTTATCTCACAATAACTTCTCAGGACCAATTCCTAAAGATAATCAGTTTTCAACTTTTAATGACCCCTCAATTTATGCTTACAACCCATATCTTTGTGGATCTCCACTTCCAAACATGTGCCCTGGTGATGTTTTGCATGGAGCTTCTAAAAGCAAAGGTAATGAAGAGGAAGATGGGATAGAAAAAGTATGGTTCTACTTTGTGATAGCACTAGGCTTTGGGACAGGGTTATGGGGAGTTATTGGCACTTTGTGGTTCAAGAAGAAATGGAGACATGCTTACTTCAGATGGGTGGAAGATGTTGGTGATGATATATATGTGGCAGTTGTAGTAAAAATAGCAAAGATAAAGAAGATGAAGAGAAACCATGCATGA 3576 0.3624 MERYYKCVVLFLVIIPQSCLCANSNVPCIQQEIQALLDFKASIAQHSSNKLSSWKGSHCCQWEGIGCDNVTGHVVKLDLRNPCYPPNWRQHYLQYIPCLQVIAPNVSSSLLQLEHLTYLDLTGNDFGESLIPMFIGSMGRLEHLSLSDAELSGNIPNSFGNLKSLQFLDISSNDNFSYSFQIRQDTSWISKLHSLKHLDLSSVPINDPHYLFQVLNLLPSLSHLSLYDCQLDNSLIPHYAFQNMTNLVYLDLSFNNMLSGPIPEVFQNMTSIESLYLSRNNINSIPLWFSELDKLTLLDLSGNGLRGQIPSYAFTNLSSLVHLDLSYNQLDSVSSLSFANLKKFAYLDLSFNEFYGPIPEVFQNMTSIESLHLSGNHFTLVPSWFCNFQKLTYLDLSMNGIHGPIPEGLRNLTSIKFLDLRDNSLTSIPSWFVELKRLVYLDLSWNQITLKEYFLSSIINSMCRLKTLILSGNQLYTESMEHFETSKCTKYDLEYLELRHNDISGHLPTWLEKLENLKYLDFTSSFLHGPIPVSIGKLSKLHQLSLSDNTFEGLIPKSIGQLVYLTNLDLSSNKFHGSVPQSLWRLTNLEFLDLSNNSFNGFIPESIGQLGYLTHLDLSSNKFDGSIPQNLWKLTNLKFLDLSNNSFNGVIPESIGQLVFLTKLDLSSNKFHGSIPQSLWKLANLESIDLSNNYFNGIISISLCQLVNLDSLDISSNKLDGMISMEKGCHLKLQYLNLSHNQMTGSIPKNIGHIMLYLGNLFLGNNHINGSIPISMCQMQLTNLDLSKNNLSGEIPNCWEDSQELSEINLSSNKLTGEFPSSFGNLPFLFWLHLNNNSLQGEIPTSFRNMKRLLLLDLGENQLSGSIPSSWTENTFPLVQIIRLPHNTLSGSIPSQLCQLKSLKILDLSRNKLQGSIPRCIGNLEGMKFEKSISSPIHMQSYKLTSLPPLAPPAPSQVFSADAPSMEWPTQDLTERMKGMELEYTKILKLVVNIDLSENRLVGFIPKEIAWLTGLHGLNLSRNQLKGEIPGLIGDMKSLESLDMSHNQLSGKIPNTMSAITSLSFLNLSHNNFSGPIPKDNQFSTFNDPSIYAYNPYLCGSPLPNMCPGDVLHGASKSKGNEEEDGIEKVWFYFVIALGFGTGLWGVIGTLWFKKKWRHAYFRWVEDVGDDIYVAVVVKIAKIKKMKRNHA 1191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04373 1191 Pfam Leucine Rich Repeat 902 924 IPR001611 GO:0005515
Vivi1g04373 1191 Pfam Leucine Rich Repeat 636 657 IPR001611 GO:0005515
Vivi1g04373 1191 ProSiteProfiles Leucine-rich repeat profile. 319 340 IPR001611 GO:0005515
Vivi1g04373 1191 Pfam Leucine rich repeat 540 598 IPR001611 GO:0005515
Vivi1g04373 1191 Pfam Leucine rich repeat 359 401 IPR001611 GO:0005515
Vivi1g04373 1191 Pfam Leucine rich repeat 409 448 IPR001611 GO:0005515
Vivi1g04373 1191 Pfam Leucine rich repeat 309 353 IPR001611 GO:0005515
Vivi1g04373 1191 Pfam Leucine rich repeat 804 863 IPR001611 GO:0005515
Vivi1g04373 1191 Pfam Leucine rich repeat 115 174 IPR001611 GO:0005515
Vivi1g04373 1191 Pfam Leucine rich repeat 661 719 IPR001611 GO:0005515
Vivi1g04373 1191 Pfam Leucine rich repeat 246 305 IPR001611 GO:0005515
Vivi1g04373 1191 Pfam Leucine rich repeat 1015 1073 IPR001611 GO:0005515
Vivi1g04373 1191 PRINTS Leucine-rich repeat signature 781 794 - -
Vivi1g04373 1191 PRINTS Leucine-rich repeat signature 900 913 - -
Vivi1g04373 1191 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Vivi1g04373 1191 Gene3D Ribonuclease Inhibitor 213 381 IPR032675 -
Vivi1g04373 1191 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 728 935 - -
Vivi1g04373 1191 Gene3D Ribonuclease Inhibitor 779 876 IPR032675 -
Vivi1g04373 1191 Gene3D Ribonuclease Inhibitor 492 577 IPR032675 -
Vivi1g04373 1191 SUPERFAMILY RNI-like 119 485 - -
Vivi1g04373 1191 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 983 1107 - -
Vivi1g04373 1191 Gene3D Ribonuclease Inhibitor 578 675 IPR032675 -
Vivi1g04373 1191 SMART LRR_typ_2 1012 1035 IPR003591 -
Vivi1g04373 1191 SMART LRR_typ_2 218 243 IPR003591 -
Vivi1g04373 1191 SMART LRR_typ_2 412 434 IPR003591 -
Vivi1g04373 1191 SMART LRR_typ_2 900 924 IPR003591 -
Vivi1g04373 1191 SMART LRR_typ_2 538 561 IPR003591 -
Vivi1g04373 1191 SMART LRR_typ_2 138 161 IPR003591 -
Vivi1g04373 1191 SMART LRR_typ_2 1036 1060 IPR003591 -
Vivi1g04373 1191 SMART LRR_typ_2 365 387 IPR003591 -
Vivi1g04373 1191 SMART LRR_typ_2 317 340 IPR003591 -
Vivi1g04373 1191 SMART LRR_typ_2 586 610 IPR003591 -
Vivi1g04373 1191 SMART LRR_typ_2 435 457 IPR003591 -
Vivi1g04373 1191 SMART LRR_typ_2 269 291 IPR003591 -
Vivi1g04373 1191 SMART LRR_typ_2 658 682 IPR003591 -
Vivi1g04373 1191 SMART LRR_typ_2 826 849 IPR003591 -
Vivi1g04373 1191 SMART LRR_typ_2 850 874 IPR003591 -
Vivi1g04373 1191 SMART LRR_typ_2 244 268 IPR003591 -
Vivi1g04373 1191 SMART LRR_typ_2 634 657 IPR003591 -
Vivi1g04373 1191 SMART LRR_typ_2 292 316 IPR003591 -
Vivi1g04373 1191 SUPERFAMILY RNI-like 491 778 - -
Vivi1g04373 1191 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 457 727 - -
Vivi1g04373 1191 SMART LRR_sd22_2 682 703 - -
Vivi1g04373 1191 SMART LRR_sd22_2 1036 1070 - -
Vivi1g04373 1191 SMART LRR_sd22_2 388 411 - -
Vivi1g04373 1191 SMART LRR_sd22_2 269 294 - -
Vivi1g04373 1191 SMART LRR_sd22_2 435 456 - -
Vivi1g04373 1191 SMART LRR_sd22_2 900 926 - -
Vivi1g04373 1191 SMART LRR_sd22_2 317 338 - -
Vivi1g04373 1191 SMART LRR_sd22_2 706 727 - -
Vivi1g04373 1191 SMART LRR_sd22_2 244 260 - -
Vivi1g04373 1191 SMART LRR_sd22_2 412 433 - -
Vivi1g04373 1191 SMART LRR_sd22_2 492 519 - -
Vivi1g04373 1191 Gene3D Ribonuclease Inhibitor 987 1105 IPR032675 -
Vivi1g04373 1191 Gene3D Ribonuclease Inhibitor 30 212 IPR032675 -
Vivi1g04373 1191 Gene3D Ribonuclease Inhibitor 676 778 IPR032675 -
Vivi1g04373 1191 SUPERFAMILY L domain-like 779 1104 - -
Vivi1g04373 1191 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 458 826 - -
Vivi1g04373 1191 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 188 451 - -
Vivi1g04373 1191 Gene3D Ribonuclease Inhibitor 877 948 IPR032675 -
Vivi1g04373 1191 Gene3D Ribonuclease Inhibitor 382 491 IPR032675 -
Vivi1g04373 1191 Pfam Leucine Rich repeat 731 745 IPR001611 GO:0005515
Vivi1g04373 1191 Gene3D - 975 986 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04373 Vivi-Chr1 93299072 93302830 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04373 189 919 Miscellaneous Gene Families AT1G74180 30.364 3.69e-56 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04373 - - vvo:131635159 2342
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g04373 1 93299072 93302830 Vivi1g04373 1 93299072 93302830 ECH