Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04369 ATGAATTCAGTAGCCCTTTTAGGTCTAAGGAAAAGGGTAGTCGACAAAATTTCCCATTTTTTTGTTATTCGTCGGAGATTATGTAGCCACACGTTTGATGGTAATAATGGGTTTGAATGCATTGAGGAGCCTTTGAAAAAAATAGTTTCAGATTTTGATTCTACTTTAGATGAAAGGATCAATGATTCAAACTGTGATCAGAAGCCCTTTTCACTTAGAAAAGGGTTCTTAGATTCTGTGAAGTTAGATGCTAAGAAGGCCCTTGAGGTTCTAAGACAAGATGGTCCTGGTCTTGATGCTAGATTGATTTTAGAGGAGTTGAGTATAAGACCTTCGGGGATTCTTGTTAGAGAGGTTCTCTTCGGAATTTTGAAGAGCATAAATACTGAGAATAAGACCAGGTGTGCAAAGCTGGCTTATAAGTTTTTTGTGTGGTGTAGTCAGCAAGAGGATTACCGGCACACTGCGAATGCCTATCACTTGATTATGAACATATATGCTCAATGCAAAGAGTTTAGGGCGGTGTGGAGGTTGGTTGATGAGATGATTGAGAAAGGCTATCCGGCTACTGCGCGTACTTTCAATGTTTTGGTTCGGACTTGTGGCGAGGCGGGTTTGGCTAAGACGTTGGTGGAGAGGTTCATAAAATCGAAGAATTTTAGCTATAGGCCTTTTAAGCATTCCTACAATGCAATTCTACATAGTTTTCTTGTATTAAACCAATACAAATTGATTGAGTGGGTTTATGAACAGATGTTGCTTGATGGTTTTTCGTCAGATGTTTTGACTTATAATATTGTCATGTATGCCAAGTATAGACTTGGAAAGGTGGATCAGTTTCACATACTGCTTGATGAGATGGGTAGAAATGGATTTTCTCCGGATTTTCATACTTTCAACATTCTTCTTCATGCTCTTGGTAAAGGGGATAAACCACTTGCCGCTCTTAATCTTTTAAATCACATGAGAGAAACAGGTATAGAGCCAACGGTACTTCATTTTACCACATTGATAGATGGACTCAGCAGAGCCGGGAATTTGGATGCTTGCAAATATTTTTTCGATGAAATGATAAAGAACGGGTGCATGCCAGATGTGGTGGCTTACACTGTTATGATAACGGGATATGTAGTGGCTGGTGAGCTTGAGAAAGCACAGGGAATGTTTCAAGAGATGCTTTCCAAGGAGCAAGTTCCAAATGTTTTTACATACAATTCCATGATTCGGGGGTTTTGTATGGAAGGAAAATTTGACGAAGCACTCTCAATGTTCAAGGAAATGGAAAAGAAAGGTTGTAGTCCAAACTCTGTTGTCTATATTACATTAGTGGATTGTTTGCGGAATGCCGGAAGGGTTGCTGATGCTCGTGAGGTGTTAAGACAAATGATGGAGACAGGGAAGTATGCCCACTTACTTTCAAGATTCAAAGGGTTTAAGATGTAG 1443 0.3964 MNSVALLGLRKRVVDKISHFFVIRRRLCSHTFDGNNGFECIEEPLKKIVSDFDSTLDERINDSNCDQKPFSLRKGFLDSVKLDAKKALEVLRQDGPGLDARLILEELSIRPSGILVREVLFGILKSINTENKTRCAKLAYKFFVWCSQQEDYRHTANAYHLIMNIYAQCKEFRAVWRLVDEMIEKGYPATARTFNVLVRTCGEAGLAKTLVERFIKSKNFSYRPFKHSYNAILHSFLVLNQYKLIEWVYEQMLLDGFSSDVLTYNIVMYAKYRLGKVDQFHILLDEMGRNGFSPDFHTFNILLHALGKGDKPLAALNLLNHMRETGIEPTVLHFTTLIDGLSRAGNLDACKYFFDEMIKNGCMPDVVAYTVMITGYVVAGELEKAQGMFQEMLSKEQVPNVFTYNSMIRGFCMEGKFDEALSMFKEMEKKGCSPNSVVYITLVDCLRNAGRVADAREVLRQMMETGKYAHLLSRFKGFKM 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04369 480 SUPERFAMILY HCP-like 338 464 - -
Vivi1g04369 480 NCBIfam pentatricopeptide repeat 437 466 IPR002885 -
Vivi1g04369 480 NCBIfam pentatricopeptide repeat 297 331 IPR002885 -
Vivi1g04369 480 NCBIfam pentatricopeptide repeat 334 366 IPR002885 -
Vivi1g04369 480 NCBIfam pentatricopeptide repeat 367 401 IPR002885 -
Vivi1g04369 480 NCBIfam pentatricopeptide repeat 158 188 IPR002885 -
Vivi1g04369 480 NCBIfam pentatricopeptide repeat 402 436 IPR002885 -
Vivi1g04369 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 469 IPR002885 -
Vivi1g04369 480 Gene3D Tetratricopeptide repeat domain 115 237 IPR011990 GO:0005515
Vivi1g04369 480 Pfam PPR repeat family 329 376 IPR002885 -
Vivi1g04369 480 Pfam PPR repeat family 399 446 IPR002885 -
Vivi1g04369 480 Pfam PPR repeat family 260 307 IPR002885 -
Vivi1g04369 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 400 434 IPR002885 -
Vivi1g04369 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
Vivi1g04369 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
Vivi1g04369 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
Vivi1g04369 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 155 189 IPR002885 -
Vivi1g04369 480 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 299 466 - -
Vivi1g04369 480 Pfam PPR repeat 159 186 IPR002885 -
Vivi1g04369 480 Pfam PPR repeat 228 257 IPR002885 -
Vivi1g04369 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Vivi1g04369 480 Gene3D Tetratricopeptide repeat domain 396 467 IPR011990 GO:0005515
Vivi1g04369 480 Gene3D Tetratricopeptide repeat domain 248 395 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04369 Vivi-Chr1 93293378 93297600 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g04369 228 466 Glycosyltransferase AT1G05670 32.636 8.51e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04369 - - ccaj:109794849 786.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g04369 1 93293378 93297600 Vivi1g04369 1 93293378 93297600 ECH