Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04352 ATGGGAAAACAAAAACAACAAGTAATCTCCCGCTTCTTCGCCCCAAAACCCAAACCCCCTTCATCAACCACCGACCCCCCTCCACCCTCACCCTCTCCTCGTCCCACTCCTCCCACTCCCAAAATCTCCACCACCGTCTCTTTCTCTCCAGCCAAACGCCGCCTCATCTCTCAACTAACATCATCCCCCAACAAACAACCCAAACTCTCTGTACCCTCTCCACCCAATCCCTCCCTTCATCAACGTTTCCTTCAAAAGCTTCTAGAACCTTCCCCTCCGGACCCACACCTCCCTTCGTCTTCCCAACCGGTAAAGTTTACTCCTTTGGAGGAACAGGTAGTGGAACTCAAAGCTAAATACCCTGATGTTCTTTTGATGATTGAAGTTGGTTACAAGTATAGGTTTTTCGGCCAGGATGCCGAGACTGCTGCTAGAGTGTTGGGTATATATGCGCATATGAATCATAATTTTTTAACTGCTAGCATACCAACTGTTCGATTGCATGTCCATGTGAGGAGGCTTGTGAGTGCGGGGTATAAAGTTGGTGTTGTTAAGCAGACTGAGACTGCTTCTATTAAGGCCCATGGTTTGAACCGGGGTGGCCCGTTTTGCAGAGGGTTGTCAGCTTTGTATACGAAGGCGACGTTGGAGGCGGCTCAGGATTTGGGAGGTGGGGAAGATGAGTGTGGGTCGGTGAGTAACTACTTGCTGTGTGTTGTGGAGAAGAGCATTTCGGGGGAGAGAAAGTCTAAGGGTGGTGTGGAAGGTGGTTTTGATGTGAGGATTGGGATTGTTGGTGTGGAGATATCGACTGGAGATGTTGTTTACGGAGAGTTTAATGATAATTTTTTGAGGAGTGAACTTGAGGCTGTTGTTGTTAGTTTGTCTCCGGCTGAGTTGCTTCTTGGGGACCCTCTTTCTAAACAAACTGAGAAGTTATTATTAGCTTTCGCTGGACCCTCCTCAAATGCTCGTGTGGAGCGTGCCTCACGAGATTGCTTCACTGATGGAGGCGCTTTAGCTGAAGTTATGACCTTGTATGAAAACATGTGTGTTGATAGTTCATCAGATTCTGTGCAAGGCAATGAATTGACTGAGCATAAAAGTCAGCAGATGGAAGTCAAGGAGGCCATGAACCTTCCAGATTTGGCTGTTGAAGCTTTAGCTTTAACTATTCGCCATTTGAAGGGATTCGGTTTTGAAAGAATTCTGTGCTCAGGTGCTTTAAGACCCTTTGCAAACAATACTGAAATGACTCTCTCAGCCAATGCACTACTACAACTGGAGGTCTTACAAAATAACAGCGATGGATCTGATAGTGGTTCCTTGTTACAAACTATGAATCACACTCTTACTATATTTGGTTCCAGGCTTCTTAGGCATTGGGTGACACACCCACTATGTGATCAAACCATGATTTCTGCCCGTCTTAATGCTGTGTCTGAAATCGCAGAGTCCATGGGAACTTGTAATGGCATGAAGAATCTTGAATGTTCTGAGGAAGATCCTGATGTAACGATTGTGCAGCCTGAGTTAGCGAACATACTTTCATTGGTTTTGAAAGCCCTGGGCCGGGCACCTGATATACAGCGTGGCATTACAAGAATTTTCCATTGCACTGCTACCCCATCTGAGTTTATTTCCATTATTCAAGCTATTTTGTCTGCTGGAAAACGGCTTCAGCAACTTAACATAGGAGAGGGGGATGCCGATAATAATAATAAATTGTACTCTGGTTTGTTAAAGAAGTTAATTTCAACCGCTTCCTCTGCAAATGTTATTGGTAAAGCAGCAAAAATGTTGTCATCTTTAAATAAAGACTCTGCTTATCAAGGAGATCTGACAAATATGATCGTTGCAACTGAGGGACAATTTCCAGAGGTATTTACAACTCGAAAGGCTTTTCAGATGGCATTGGAACAATTAAATTTGTTGATTGGCTTGTACCGTAAACGGCTTGGAATGCGAAATTTGGAATATATGTCTGTTTCTGGTGTAACTCACTTGATAGAGTTATCATCTGATGCAAAAGTTCCTTCAAATTGGGTTAAGATAAATAGCACAAAGAAAACAATTCGGTATCACCCTCCTGAAGTAGTGACAGCATTGGATGAGTTATCATTAGCAAAAGAGAAGCTTACTATTGCCTGCCGAGCTGCATGGGACAGCTTTCTGAGGGACTTCGGTAAACATTATGCTGAGTTCCAAGCTTCTGTTCAAGCACTAGCTGCTTTAGATTGTCTGCATTCACTCGCCACTCTTTCAAGAAACAAGGGTTATGTCTGCCCTGCTTTTGTAGATGATGATGAGCCTGTTCAGATACAATTTTGTTCTGGTAGACATCCGGTTTTGGAGACCACCTTGCAAAATAATTTTGTCCCAAACGATACAAAATTACACGCTGATAGAGAGTACTGTCAGATTGTCACTGGACCCAATATGGGAGGGAAAAGTTGCTATGTTCGCCAAGTGGCTTTAATCACTCTCATGGCTCAGGTTGGCTCCTATGTTCCAGCATCATCAGCAAAATTACATGTCCTTGATGGGATCTACACTCGGATGGGTGCTTCTGACAGTATTCAGTTAGGGAGAAGCACTTTCCTAGAAGAATTGAGCGAGACGTCACACATACTTCATAGGTGTACAGAACGATCACTAGTTATACTTGATGAGCTTGGGAGAGGTACAAGTACACATGATGGCATGGCCATTGCTTATGCGACATTACATTATCTTCTTAAGCAGAAGAAGAGCTTGGTCCTCTTTGTCACTCATTATCCAAAGATTGCCAGTCTAGAAACTGAATTTCCAGGCTCTGTAGCAGCATATCACATGTCACATATGACCGCAAACGATGATTCAAGTAAAAACTCCAACGATCATGAAGATGTCACTTATTTATATAAGCTCATACCTGGTGTTTCGGAGAGGAGTTTTGGTTTTAAAGTTGCCCATCTTGCACAGTTACCACCATATTGCATTAGGCGAGGTATTGTCATGGCTTCCAAATTAGAATCACTAGTAAACAGTAGATTACATGGTAGATCAGGAAATGAGTTGTTGTTGTTGGAAGCACCTGTTATTGATCAAGAGCAAGAACCACTTGATTGTCCGCGTCAAGACTTTGACAGTGCATTTAAGGAATTCTATTCAAACTTAAAAGCTGCAATACTAGATGATGACAATGCGAAAAGCTTTCAACTTTTAGAGAATGCTAGAAGCATTGCAAAGACATTAGTTAGCAGGTCAATGCAGTTGGTATAA 3264 0.4308 MGKQKQQVISRFFAPKPKPPSSTTDPPPPSPSPRPTPPTPKISTTVSFSPAKRRLISQLTSSPNKQPKLSVPSPPNPSLHQRFLQKLLEPSPPDPHLPSSSQPVKFTPLEEQVVELKAKYPDVLLMIEVGYKYRFFGQDAETAARVLGIYAHMNHNFLTASIPTVRLHVHVRRLVSAGYKVGVVKQTETASIKAHGLNRGGPFCRGLSALYTKATLEAAQDLGGGEDECGSVSNYLLCVVEKSISGERKSKGGVEGGFDVRIGIVGVEISTGDVVYGEFNDNFLRSELEAVVVSLSPAELLLGDPLSKQTEKLLLAFAGPSSNARVERASRDCFTDGGALAEVMTLYENMCVDSSSDSVQGNELTEHKSQQMEVKEAMNLPDLAVEALALTIRHLKGFGFERILCSGALRPFANNTEMTLSANALLQLEVLQNNSDGSDSGSLLQTMNHTLTIFGSRLLRHWVTHPLCDQTMISARLNAVSEIAESMGTCNGMKNLECSEEDPDVTIVQPELANILSLVLKALGRAPDIQRGITRIFHCTATPSEFISIIQAILSAGKRLQQLNIGEGDADNNNKLYSGLLKKLISTASSANVIGKAAKMLSSLNKDSAYQGDLTNMIVATEGQFPEVFTTRKAFQMALEQLNLLIGLYRKRLGMRNLEYMSVSGVTHLIELSSDAKVPSNWVKINSTKKTIRYHPPEVVTALDELSLAKEKLTIACRAAWDSFLRDFGKHYAEFQASVQALAALDCLHSLATLSRNKGYVCPAFVDDDEPVQIQFCSGRHPVLETTLQNNFVPNDTKLHADREYCQIVTGPNMGGKSCYVRQVALITLMAQVGSYVPASSAKLHVLDGIYTRMGASDSIQLGRSTFLEELSETSHILHRCTERSLVILDELGRGTSTHDGMAIAYATLHYLLKQKKSLVLFVTHYPKIASLETEFPGSVAAYHMSHMTANDDSSKNSNDHEDVTYLYKLIPGVSERSFGFKVAHLAQLPPYCIRRGIVMASKLESLVNSRLHGRSGNELLLLEAPVIDQEQEPLDCPRQDFDSAFKEFYSNLKAAILDDDNAKSFQLLENARSIAKTLVSRSMQLV 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04352 1087 FunFam DNA mismatch repair protein 97 227 - -
Vivi1g04352 1087 MobiDBLite consensus disorder prediction 41 67 - -
Vivi1g04352 1087 MobiDBLite consensus disorder prediction 1 79 - -
Vivi1g04352 1087 SUPERFAMILY DNA repair protein MutS, domain I 100 215 IPR016151 GO:0005524|GO:0006298|GO:0030983
Vivi1g04352 1087 FunFam DNA mismatch repair protein MSH3 760 1031 - -
Vivi1g04352 1087 PIRSF Msh6 95 1033 IPR017261 GO:0006298|GO:0030983
Vivi1g04352 1087 Gene3D - 602 728 - -
Vivi1g04352 1087 Pfam MutS domain I 107 217 IPR007695 GO:0005524|GO:0006298|GO:0030983
Vivi1g04352 1087 Gene3D - 420 753 - -
Vivi1g04352 1087 Gene3D - 760 1025 IPR027417 -
Vivi1g04352 1087 Pfam MutS domain II 234 311 IPR007860 GO:0005524|GO:0006298|GO:0030983
Vivi1g04352 1087 Pfam MutS domain III 423 752 IPR007696 GO:0005524|GO:0006298|GO:0030983
Vivi1g04352 1087 SMART DNAend 438 787 IPR007696 GO:0005524|GO:0006298|GO:0030983
Vivi1g04352 1087 MobiDBLite consensus disorder prediction 19 40 - -
Vivi1g04352 1087 SMART mutATP5 804 1002 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vivi1g04352 1087 Pfam MutS domain V 807 1004 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vivi1g04352 1087 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 111 1021 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Vivi1g04352 1087 FunFam DNA mismatch repair protein Msh3 602 728 - -
Vivi1g04352 1087 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 760 1006 IPR027417 -
Vivi1g04352 1087 ProSitePatterns DNA mismatch repair proteins mutS family signature. 885 901 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vivi1g04352 1087 Gene3D MutS, connector domain 230 417 IPR036678 GO:0005524|GO:0006298|GO:0030983
Vivi1g04352 1087 Gene3D DNA repair protein MutS, domain I 98 224 IPR016151 GO:0005524|GO:0006298|GO:0030983
Vivi1g04352 1087 FunFam DNA mismatch repair protein 230 415 - -
Vivi1g04352 1087 SUPERFAMILY DNA repair protein MutS, domain III 422 757 IPR036187 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04352 Vivi-Chr1 92851848 92861150 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04352 K08736 - gmx:100789883 1580.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g04352 1 92851848 92861150 Vivi1g04352 1 92851848 92861150 ECH