Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi1g04337 | ATGGGTAATTCTTTTGGTTGCTCCGCTTCCGGTGAGAGACTGGTGTCGGCGGCGAGAGACGGTGACCTTGTGGAGGCGAAGATGCTTTTGAACTGTAACCCTTGTCTTGCTAAATACTCTACTTTTGGAGGGCTTAATTCTCCTCTTCATTTTGCATCTGCAAAGGGTCATAACGAGATTGTTGCATTGTTGCTTGAGAATGGAGCTGATGTTAATTCAAAAAATTATTCCGGCCAGACGGCCTTGATGCAAGCTTGTAGATATGGTCATTGGGAAGTTGTACAGACACTTCTACTCTTCAGATGCAATGTTATGAGAGGAGATTATCTCAGTGGGAGAACAGCTCTTCACTTTGCAGCGATGAATGGCCATGTAAGATGTATTAGACTTGTTGTGGCCGATTTTGTTCCGAGTGCGCCTTATGAACCTATACGTGCTTGCTCGGATGCTGTCAATGGTGGTGGATCAAATGTGAGAGGCAAAAATGAAGAAAGTGCCCTGTCGAAGTTTGTAAATAAGACAGCTGATGGTGGTATCACTGCCCTTCATATGGCTTCATTAAATGGTTACTTTGATTGTGTGCAACTGCTACTTGATCTTGATGCAAATATGTCATCTGTGACATTTCATTACGGAACATCAATGGATTTAATCGGGGCTGGAAGCTCTCCTTTGCATTATGCTGCTTGTGGCGGTAATTTAAAATGCTGTCAGATCCTCCTTGCAAGAGGTGCAAGTCGAATGTCTTTGAATTGCAATGGGTGGCTTCCGCTTGATATTGCTCGGATGTGGGGCCGCCATTGGCTTGAACTGTTGTTGGCACCCAGTTCTGAAGCCGTAACACCCTCCTTCCCTCATTCAAATTACTTGTCCTTGCCTCTCATGAGTGCTCTCAACATAGCAAGAGAGTATGGATTGCAATCCTCTACGACTTCCTCTGATGAGATTGACTTTTGTGCTGTATGCCTGGAGAAGCCATGTTCAGTGGCAGCAGAAGGATGCGGACATGAACTTTGTGTCAGATGTGCGCTCTATCTTTGCTCTTCAAGCAATATTTCTTCTGAAACCGTTGGCCCTCCTGGCTCTATCCCTTGCCCGCTTTGTAGACACGGAATTGTCTCTTTTGTCAAGTTGCCTGGTTCACAAGCAAGAGAAAATAAATTACATGTGTCTCTAGGGCTCTGCACGCCGTGCATACTACATCCGCGTGACGTAGATCACCCGTCTCTTTCTCACACGTCAGAGACCCAAAGAAACTGTGTTGACTCTGTTGCTTCGGAGTTACTCTGCCCCGTCACATGTAGTCCGTTTCCATCTATGACAATACCATTGTGCACCTGCAATGAGGGTTCATGTCCATCATTTGAACCGCGCAACGTAGAAGCGCGAGACGAACCATCTCGTCACTCACAACCATCAACAACGGATCAAGATAAAATTGAAGGCCCGAGACTGGATAAAACAACTTGCTCGAACATGCTTTGGGGTAGAAGAAGTTACAGCAGGGAGAACCAATGCAACTCAGAAATAAATGCTTGA | 1539 | 0.4568 | MGNSFGCSASGERLVSAARDGDLVEAKMLLNCNPCLAKYSTFGGLNSPLHFASAKGHNEIVALLLENGADVNSKNYSGQTALMQACRYGHWEVVQTLLLFRCNVMRGDYLSGRTALHFAAMNGHVRCIRLVVADFVPSAPYEPIRACSDAVNGGGSNVRGKNEESALSKFVNKTADGGITALHMASLNGYFDCVQLLLDLDANMSSVTFHYGTSMDLIGAGSSPLHYAACGGNLKCCQILLARGASRMSLNCNGWLPLDIARMWGRHWLELLLAPSSEAVTPSFPHSNYLSLPLMSALNIAREYGLQSSTTSSDEIDFCAVCLEKPCSVAAEGCGHELCVRCALYLCSSSNISSETVGPPGSIPCPLCRHGIVSFVKLPGSQARENKLHVSLGLCTPCILHPRDVDHPSLSHTSETQRNCVDSVASELLCPVTCSPFPSMTIPLCTCNEGSCPSFEPRNVEARDEPSRHSQPSTTDQDKIEGPRLDKTTCSNMLWGRRSYSRENQCNSEINA | 512 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi1g04337 | 512 | ProSiteProfiles | Ankyrin repeat region circular profile. | 177 | 205 | - | - | |
| Vivi1g04337 | 512 | ProSiteProfiles | Ankyrin repeat region circular profile. | 220 | 246 | - | - | |
| Vivi1g04337 | 512 | ProSiteProfiles | Ankyrin repeat profile. | 220 | 246 | IPR002110 | GO:0005515 | |
| Vivi1g04337 | 512 | ProSiteProfiles | Zinc finger RING-type profile. | 319 | 369 | IPR001841 | - | |
| Vivi1g04337 | 512 | ProSiteProfiles | Ankyrin repeat profile. | 111 | 132 | IPR002110 | GO:0005515 | |
| Vivi1g04337 | 512 | Pfam | Ankyrin repeats (3 copies) | 214 | 274 | IPR002110 | GO:0005515 | |
| Vivi1g04337 | 512 | FunFam | E3 ubiquitin-protein ligase XBAT33 | 6 | 140 | - | - | |
| Vivi1g04337 | 512 | Pfam | Ankyrin repeats (many copies) | 46 | 98 | IPR002110 | GO:0005515 | |
| Vivi1g04337 | 512 | SMART | ring_2 | 319 | 368 | IPR001841 | - | |
| Vivi1g04337 | 512 | Gene3D | - | 4 | 139 | IPR036770 | - | |
| Vivi1g04337 | 512 | SMART | ANK_2a | 220 | 252 | IPR002110 | GO:0005515 | |
| Vivi1g04337 | 512 | SMART | ANK_2a | 111 | 141 | IPR002110 | GO:0005515 | |
| Vivi1g04337 | 512 | SMART | ANK_2a | 77 | 106 | IPR002110 | GO:0005515 | |
| Vivi1g04337 | 512 | SMART | ANK_2a | 177 | 206 | IPR002110 | GO:0005515 | |
| Vivi1g04337 | 512 | SMART | ANK_2a | 44 | 73 | IPR002110 | GO:0005515 | |
| Vivi1g04337 | 512 | ProSitePatterns | Zinc finger RING-type signature. | 334 | 343 | IPR017907 | - | |
| Vivi1g04337 | 512 | PANTHER | ANKYRIN REPEAT-CONTAINING | 112 | 263 | - | - | |
| Vivi1g04337 | 512 | MobiDBLite | consensus disorder prediction | 458 | 487 | - | - | |
| Vivi1g04337 | 512 | Pfam | Ankyrin repeat | 112 | 130 | IPR002110 | GO:0005515 | |
| Vivi1g04337 | 512 | Pfam | Ankyrin repeat | 178 | 206 | IPR002110 | GO:0005515 | |
| Vivi1g04337 | 512 | ProSiteProfiles | Ankyrin repeat profile. | 44 | 76 | IPR002110 | GO:0005515 | |
| Vivi1g04337 | 512 | ProSiteProfiles | Ankyrin repeat region circular profile. | 111 | 132 | - | - | |
| Vivi1g04337 | 512 | ProSiteProfiles | Ankyrin repeat region circular profile. | 44 | 75 | - | - | |
| Vivi1g04337 | 512 | MobiDBLite | consensus disorder prediction | 458 | 485 | - | - | |
| Vivi1g04337 | 512 | SUPERFAMILY | Ankyrin repeat | 14 | 273 | IPR036770 | - | |
| Vivi1g04337 | 512 | Gene3D | - | 155 | 303 | IPR036770 | - | |
| Vivi1g04337 | 512 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 304 | 391 | IPR013083 | - | |
| Vivi1g04337 | 512 | ProSiteProfiles | Ankyrin repeat profile. | 177 | 209 | IPR002110 | GO:0005515 | |
| Vivi1g04337 | 512 | SUPERFAMILY | RING/U-box | 315 | 375 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vivi1g04337 | Vivi-Chr1 | 92603863 | 92607527 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi1g04337 | 10 | 286 | Miscellaneous Gene Families | AT1G07710 | 28.070 | 5.51e-14 | 72.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi1g04337 | K19044 | - | gmx:100785638 | 926.391 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vivi1g04337 | 1 | 92603863 | 92607527 | Vivi1g04337 | 1 | 92603863 | 92607527 | ECH | |
| Vivi2g05482 | 2 | 180426204 | 180431020 | Vivi1g04337 | 1 | 92603863 | 92607527 | PCT |