Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04311 ATGGACTCCACCGATATCAAGAAAGACCAAGCTCCACCAGCACCCGAAGACCCCGAGAAGAAGAAGAAAAAGGACGAAAAGGCAAGGGAGAAGCAATTGAAAAAGGAGAAGTTTCTTCAGAAGCAAGCTCAGCAACAACAAGCGCAACAATCAGCAGCCAATGCTTCCAAAAAGAGCGAAAAGAAAGCTGTGAAACGCGGTGCGGAGGATGAGAATCCGGCTGATTACATTGATCCGGAGACTACATTGGGTGATAAGAAGCAAATGTCACGGCAATTGGCGAAACAGTATAATCCGACTGCAGTTGAGAAATCGTGGTATGAATGGTGGGAGAAATCGAAGTATTTTGTGGCAGATGCTAGCAGCACTAAACCGTCTTTTGTTATTGTTTTGCCTCCACCAAACGTGACAGGTGCTCTCCATATAGGTCATGCTCTAACAGCTGCAATAGAGGATACAATGATTCGTTGGCGAAGAATGTCTGGATACAATACTTTGTGGGTTCCTGGGATGGATCATGCTGGAATTGCTACACAGGTAGTTGTAGAGAAAAAGATAATGCGTGAAAGGCAACTAACCAGGCATGATTTGGGCCGTGAAAAATTTATTGAAGAGGTTTGGGAATGGAAAAACAAGCACGGGGGCACAATTTTGCAACAATTACGCCGATTAGGAGCATCTTTGGATTGGTCCCGTGAGTGCTTCACAATGGATGACAAAAGATCTAAGGGTGTAACAGAGGCTTTTGTGAAGCTTTACAAGCAAGGCCTTGTCTATAGGGACTTACGGTTAGTGAATTGGGATTGTGTGTTGCGAACGGCAATATCTGATATTGAGGTGGATTATATTGATATAAAAGAAAGGACCCTACTAAAGGTTCCGGGATACGACAAACCTGTTGAATTTGGAGTTTTAACAAAATTTGCATACACTTTGGAAGGGGACCTAGGTGAAGTTGTTGTTGCCACAACTAGGATAGAAACTATGCTTGGTGACTCTGCTATTGCTGTACATCCTTCTGATGACCGGTACAGCCAATTTCATGGAAAATATGCTGTTCACCCATTTAATGGAAGGAAACTTCCTATAATTTGTGATGCTATTCTTGTTGATCCAAAGTTCGGGACAGGTGCTGTGAAGATTACACCAGCCCATGATCCTAATGATTTTGAGGTTGGGAAACGTCACAACCTTGAATTTATTAATGTTTTCACTGATGATGGGAAAATAAATTCCAATGGAGGCTCTGAATTTTTGAACATGCCACGATTTGAAGCCAGGGAAGCAATAACAGAAGCTTTACGAAAGAAGGGCCTTTATAGAGGTTCTGAAAACAATGAGATGCGCCTCGGTGTCTGTTCAAGAAGCAATGATGTAATAGAGCCCATGATAAAGCCACAGTGGTATGTCAATTGCAGTGATATCGCAAAGGAAGCTCTTCATGCTGTCACGGATGAGGAAAACAAGAAAGTAGAGATTTTTCCAAAACAATATGTGGCTGATTGGAAGAGATGGCTAGAAAACATACGTGATTGGTGCATTTCAAGGCAGCTATGGTGGGGTCACCAAATTCCTGCATGGTACGTCACTTTAGAAGATGATACACTGCAGGAATTGGGTGCTTACCACGACCATTGGGTAGTGGCTAGAAATGAAGAGGAAGCTCGGGATGAGGCTAACCAGAAGTATAATGGAAAGAAATTTAATTTAACCCGGGATCCTGACGTTCTCGATACATGGTTTTCTTCTGGTCTATTCCCGTTAACAGTGCTGGGATGGCCTGATGACTCAGAAGACCTGAAGGCGTTCTATCCAACTTCTGTTTTGGAAACTGGCCATGATATCCTCTTTTTCTGGGTTGCTCGTATGGTGATGTTAGGAATGAAATTAGGTGGTGATGTGCCTTTTAGCAAGATTTATTTGCACCCTATGATTCGTGATGCACATGGACGCAAGATGTCTAAATCTTTGGGGAATGTTATTGATCCCATTGAGGTGATAAATGGGATATCACTGGAAGGTCTACACAAGAGGTTAGAAGGCGGTAACCTTGACCCTAAAGAATTAGCTGTTGCCATAGAGGGTCAGAAGAAGGACTTTCCAAATGGTATTGATGAATGTGGCGCCGATGCTCTCCGTTTTTCCCTGGTCTCGTACACAGCTCAGTCCGACAAAATTAACCTAGATATTCAAAGGGTGGTTGGGTATCGCCAATGGTGTAACAAATTATGGAATGCAGTACGATTTGCTATGAGCAAGCTGGGAGATGATTATATTCCTCCTGCAACTTTGTCTCCCGATGCTCTCCCGTTTAGCTGCCAGTGGATACTGTCTGTGTTGAATAAAACCATATCGAAAACAACCAAGTCTCTAGAATCATATGAATTTTCACAAGCTACTACTGCTGTGTATTCTTGGTGGCAGTATCAATTGTGTGATGTGTTCATTGAAGTGATCAAGCCTTACTTTTCTGGTAACGACCCCAAGTTTACTTCCGAAAGACGCTTTGCTCAAGATACTTTGTGGTTTTGTTTGGACAATGGCCTGCGATTGCTCCATCCTTTTATGCCTTTTGTCACGGAAGAATTGTGGCAACGCCTTCCTTCGCCCAAGGAATGTAAGAGAGCAGAATCTATTATGATAGCTGATTATCCATCAGCTATAGAGGGCTGGAATAATGAAAAGGTTGAGAGTGAGATGTACCTCATTGAGTCTACTGTGAAGTCTCTCAGGTCACTGGCAAAAGAGAGACGTGACAGGCGACCGGCTTTTGTTCTCTGCCGAGCACAGGCGGTTACAGAGATTATTAACAGCCATCAATTAGAGATTACAACACTAGCTAATCTATCCTCTTTGACCGTAATCACCGAAAGTGAAGCTGTTCCTTCTGGATACGCTACTACTGTCGTAAATGAAAGCATTTCTGTTTATTTAGAGCTTCAAGGAGTTAATTCTGCAGAAGCTGAGCTTGGAAGGAAGAAGAAGATAGATGAACTAAACAAGCAAATAGAAAGATTAGAGAAGATTATGAATGCTCCAGGTTATGAAGAGAAGGTTTCACTACAAATTCGATCAAAGAATGAGGAGAAGCTAGTATCTCTAAAGGAGCGCTTATTGCTCGAGGAAACGGCTGGACTAAATCTCTAG 3147 0.4268 MDSTDIKKDQAPPAPEDPEKKKKKDEKAREKQLKKEKFLQKQAQQQQAQQSAANASKKSEKKAVKRGAEDENPADYIDPETTLGDKKQMSRQLAKQYNPTAVEKSWYEWWEKSKYFVADASSTKPSFVIVLPPPNVTGALHIGHALTAAIEDTMIRWRRMSGYNTLWVPGMDHAGIATQVVVEKKIMRERQLTRHDLGREKFIEEVWEWKNKHGGTILQQLRRLGASLDWSRECFTMDDKRSKGVTEAFVKLYKQGLVYRDLRLVNWDCVLRTAISDIEVDYIDIKERTLLKVPGYDKPVEFGVLTKFAYTLEGDLGEVVVATTRIETMLGDSAIAVHPSDDRYSQFHGKYAVHPFNGRKLPIICDAILVDPKFGTGAVKITPAHDPNDFEVGKRHNLEFINVFTDDGKINSNGGSEFLNMPRFEAREAITEALRKKGLYRGSENNEMRLGVCSRSNDVIEPMIKPQWYVNCSDIAKEALHAVTDEENKKVEIFPKQYVADWKRWLENIRDWCISRQLWWGHQIPAWYVTLEDDTLQELGAYHDHWVVARNEEEARDEANQKYNGKKFNLTRDPDVLDTWFSSGLFPLTVLGWPDDSEDLKAFYPTSVLETGHDILFFWVARMVMLGMKLGGDVPFSKIYLHPMIRDAHGRKMSKSLGNVIDPIEVINGISLEGLHKRLEGGNLDPKELAVAIEGQKKDFPNGIDECGADALRFSLVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFAMSKLGDDYIPPATLSPDALPFSCQWILSVLNKTISKTTKSLESYEFSQATTAVYSWWQYQLCDVFIEVIKPYFSGNDPKFTSERRFAQDTLWFCLDNGLRLLHPFMPFVTEELWQRLPSPKECKRAESIMIADYPSAIEGWNNEKVESEMYLIESTVKSLRSLAKERRDRRPAFVLCRAQAVTEIINSHQLEITTLANLSSLTVITESEAVPSGYATTVVNESISVYLELQGVNSAEAELGRKKKIDELNKQIERLEKIMNAPGYEEKVSLQIRSKNEEKLVSLKERLLLEETAGLNL 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04311 1048 Gene3D HUPs 94 290 IPR014729 -
Vivi1g04311 1048 Coils Coil 29 49 - -
Vivi1g04311 1048 Gene3D HUPs 440 645 IPR014729 -
Vivi1g04311 1048 CDD Anticodon_Ia_Val 728 867 IPR033705 -
Vivi1g04311 1048 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 134 145 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vivi1g04311 1048 PRINTS Valyl-tRNA synthetase signature 573 594 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Vivi1g04311 1048 PRINTS Valyl-tRNA synthetase signature 338 355 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Vivi1g04311 1048 PRINTS Valyl-tRNA synthetase signature 604 622 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Vivi1g04311 1048 PRINTS Valyl-tRNA synthetase signature 127 138 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Vivi1g04311 1048 PRINTS Valyl-tRNA synthetase signature 455 468 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Vivi1g04311 1048 MobiDBLite consensus disorder prediction 1 88 - -
Vivi1g04311 1048 FunFam Valine--tRNA ligase, mitochondrial 683 918 - -
Vivi1g04311 1048 MobiDBLite consensus disorder prediction 1 38 - -
Vivi1g04311 1048 PANTHER VALYL-TRNA SYNTHETASES 70 1042 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Vivi1g04311 1048 Gene3D - 688 918 - -
Vivi1g04311 1048 MobiDBLite consensus disorder prediction 58 73 - -
Vivi1g04311 1048 SUPERFAMILY Nucleotidylyl transferase 93 738 - -
Vivi1g04311 1048 Gene3D - 306 439 IPR009008 GO:0002161|GO:0006418
Vivi1g04311 1048 CDD ValRS_core 125 728 - -
Vivi1g04311 1048 FunFam Valine--tRNA ligase, mitochondrial 420 653 - -
Vivi1g04311 1048 Pfam tRNA synthetases class I (I, L, M and V) 106 729 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vivi1g04311 1048 Pfam Anticodon-binding domain of tRNA ligase 774 916 IPR013155 GO:0004812|GO:0006418
Vivi1g04311 1048 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 740 995 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vivi1g04311 1048 FunFam Valine--tRNA ligase, mitochondrial 95 293 - -
Vivi1g04311 1048 NCBIfam valine--tRNA ligase 94 1031 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Vivi1g04311 1048 SUPERFAMILY ValRS/IleRS/LeuRS editing domain 300 450 IPR009008 GO:0002161|GO:0006418
Vivi1g04311 1048 Hamap Valine--tRNA ligase [valS]. 93 1042 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Vivi1g04311 1048 FunFam Valine--tRNA ligase, mitochondrial 301 442 - -
Vivi1g04311 1048 MobiDBLite consensus disorder prediction 39 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04311 Vivi-Chr1 91816417 91823583 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04311 K01873 - gmx:100798111 1794.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g04311 1 91816417 91823583 Vivi1g04311 1 91816417 91823583 ECH