Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04288 ATGGCTTCCTGTTACAGACTCGACAACTTCATCATCTCTGCTTTTAAACCTAAAAACTCAAATGTTCCTCTTTCAATTCATCATCATTCATCATCATCATCATCTTCCAATTTCCCATCTTCTTTCAAAGTTCAAAACTTTCCTTTCAGGGTTCGATGTAATTCAGCTATCAGAGCCACTTCATCTTCCTCTTCTCCCACAACTATTGCAGAACCTAATGACATTAAGATTAACTCTATTCCTACTAAACCTATTGAAGGACAAAAAACTGGTACCAGTGGGCTAAGAAAAAAGGTGAAAGTGTTTATGCAAGAAAATTACCTTGCGAATTGGATTCAGGCATTGTTTAATTCGTTGCCTCAGGAGGATTACAAGAATGGAGTGTTGGTGTTGGGAGGTGACGGTCGATACTTCAATAGAGAAGCTGCACAGATAATAATCAAAATTGCTGCTGGAAATGGTGTTGGAAAAATTCTGGTTGGGAAGGAAGGGATATTGTCAACACCAGCCGTTTCTGCTGTAATAAGGAAGAGAGAGGCAAATGGTGGATTTATTATGAGTGCGAGCCATAACCCTGGTGGTCCTGAGTATGATTGGGGTATTAAGTTTAATTACAGTAGCGGACAACCTGCACCAGAATCCATCACCGACAAGATTTACGGAAACACTCTATCTATTTCTGAGATAAAGATTGCTGATATTCCCGACGTTGACTTATCAAATGTTGGAGTTACAAAATTCGGAAGCTTCAGTGTGGAAGTAATAGACCCAGTTTCTGATTACCTGGAGCTATTAGAGACAGTATTTGATTTTCCGCTAATCAAAAGTCTTATTTCACGGCCAGATTTTAGGTTTACATTTGATGCCATGCATGCAGTTGCCGGTGCTTATGCAACACCCATTTTCGTCGATAAACTTGGTGCTAGTCCGGATTCAATTTCAAATGGAATACCTTTGGAAGATTTTGGACATGGTCATCCCGATCCTAATCTAACATATGCAAAGGATCTTGTCAATATTATGTATGCTGAAAACGGACCTGATTTTGGAGCCGCTAGTGATGGTGATGGGGATAGAAATATGATTTTAGGAACAAGTTTCTTCGTAACTCCTTCAGACTCTGTAGCCGTTATTGCAGCCAATGCAAAAGAAGCGATTCCGTACTTTAAGGACAGTGTCAAGGGTCTTGCACGATCGATGCCGACAAGTGGTGCTCTAGATAGAGTCGCTGAAAAGTTGAACCTCCCTTTCTTCGAGGTTCCCACTGGTTGGAAGTTTTTCGGGAATCTTATGGATGCCGGGAATCTGTCTATTTGCGGGGAAGAGAGTTTTGGAACAGGTTCTGACCACATACGTGAGAAAGATGGAATCTGGGCTGTGTTAGCTTGGCTTTCTATTATTGCTCACCGCAACAAAGACACGAAACCAGGGGGGAAATTGATCTCTGTATCTGATGTTGTGAAGGAGCATTGGGCAACCTATGGTAGAAATTTCTTTTCTAGATACGATTACGAGGAATGTGAATCAGAAGGCGCAAATAAGATGATAGAGCACCTACGAGAAATTTTGTCTAAGAGCAAGTCTGGTGATAAATATGGAAGTTATGTCCTCGACTTTGCTGATGATTTTACATACACTGATCCTGTAGATGGAAGTGTTGTATCAAAACAAGGGGTTCGGTTTGTTTTCACCGATGGTTCAAGAATTATTTATCGTTTATCAGGAACGGGTTCCGCTGGTGCAACCGTTAGAGTGTATATTGAACAGTTTGAACCAGATGTTTCTAAACACGACGTTGATGCTCAAATTGCCTTGAAACCATTAATAGATTTAGCATTATCTGTTTCAAAGCTCAAAGACTTCACAGGGAGGGAGAAGCCTACAGTCATCACTTAA 1896 0.4077 MASCYRLDNFIISAFKPKNSNVPLSIHHHSSSSSSSNFPSSFKVQNFPFRVRCNSAIRATSSSSSPTTIAEPNDIKINSIPTKPIEGQKTGTSGLRKKVKVFMQENYLANWIQALFNSLPQEDYKNGVLVLGGDGRYFNREAAQIIIKIAAGNGVGKILVGKEGILSTPAVSAVIRKREANGGFIMSASHNPGGPEYDWGIKFNYSSGQPAPESITDKIYGNTLSISEIKIADIPDVDLSNVGVTKFGSFSVEVIDPVSDYLELLETVFDFPLIKSLISRPDFRFTFDAMHAVAGAYATPIFVDKLGASPDSISNGIPLEDFGHGHPDPNLTYAKDLVNIMYAENGPDFGAASDGDGDRNMILGTSFFVTPSDSVAVIAANAKEAIPYFKDSVKGLARSMPTSGALDRVAEKLNLPFFEVPTGWKFFGNLMDAGNLSICGEESFGTGSDHIREKDGIWAVLAWLSIIAHRNKDTKPGGKLISVSDVVKEHWATYGRNFFSRYDYEECESEGANKMIEHLREILSKSKSGDKYGSYVLDFADDFTYTDPVDGSVVSKQGVRFVFTDGSRIIYRLSGTGSAGATVRVYIEQFEPDVSKHDVDAQIALKPLIDLALSVSKLKDFTGREKPTVIT 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04288 631 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 74 631 IPR045244 GO:0004614|GO:0005975
Vivi1g04288 631 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 260 363 IPR005845 GO:0005975
Vivi1g04288 631 CDD PGM1 80 631 - -
Vivi1g04288 631 FunFam Phosphoglucomutase 5 76 264 - -
Vivi1g04288 631 FunFam Phosphoglucomutase 5 265 367 - -
Vivi1g04288 631 Pfam Phosphoglucomutase/phosphomannomutase, C-terminal domain 554 606 IPR005843 GO:0016868|GO:0071704
Vivi1g04288 631 Gene3D - 497 631 - -
Vivi1g04288 631 SUPERFAMILY Phosphoglucomutase, C-terminal domain 496 631 IPR036900 GO:0016868|GO:0071704
Vivi1g04288 631 Gene3D - 368 496 - -
Vivi1g04288 631 SUPERFAMILY Phosphoglucomutase, first 3 domains 77 289 IPR016055 GO:0005975|GO:0016868
Vivi1g04288 631 Gene3D - 76 264 - -
Vivi1g04288 631 ProSitePatterns Phosphoglucomutase and phosphomannomutase phosphoserine signature. 183 192 IPR016066 GO:0000287
Vivi1g04288 631 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 371 494 IPR005846 GO:0005975|GO:0016868
Vivi1g04288 631 Gene3D - 265 367 - -
Vivi1g04288 631 SUPERFAMILY Phosphoglucomutase, first 3 domains 259 368 IPR016055 GO:0005975|GO:0016868
Vivi1g04288 631 PRINTS Phosphoglucomutase/phosphomannomutase family signature 182 196 IPR005841 GO:0005975|GO:0016868
Vivi1g04288 631 PRINTS Phosphoglucomutase/phosphomannomutase family signature 282 301 IPR005841 GO:0005975|GO:0016868
Vivi1g04288 631 PRINTS Phosphoglucomutase/phosphomannomutase family signature 347 362 IPR005841 GO:0005975|GO:0016868
Vivi1g04288 631 PRINTS Phosphoglucomutase/phosphomannomutase family signature 318 331 IPR005841 GO:0005975|GO:0016868
Vivi1g04288 631 FunFam Phosphoglucomutase 5 477 631 - -
Vivi1g04288 631 SUPERFAMILY Phosphoglucomutase, first 3 domains 355 501 IPR016055 GO:0005975|GO:0016868
Vivi1g04288 631 FunFam Phosphoglucomutase, cytoplasmic 1 368 466 - -
Vivi1g04288 631 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 88 227 IPR005844 GO:0005975|GO:0016868
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04288 Vivi-Chr1 91364260 91369237 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04288 K01835 - gmx:100802730 1098.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g04288 1 91364260 91369237 Vivi1g04288 1 91364260 91369237 ECH