Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g04270 ATGTGTAAACTATATTGTTCTTTTTTCCTATTTATCACACTATTCCTCCACCTAAACAAACCAAGCAATTCTTCACTAGAACAACTACCAACTCCACCATTACCAATTCTCCCACTCCCAACCTACTCACAGCTAAAATGGCAACAAAGGGAAATCATAATGTTCCTTCATTTCGGTGTCAACACATTCAGTGACAGTGAATGGGGTACAGGCCATGAAAATCCATCAATATTCAATCCAACTGGACTCAACACAACCCAATGGGCTAGTGTGGCTGAAGAAGCAGGAATTTCATTGATGATATTAACTGCAAAACATCATGATGGATTTTGTCTATGGCCTTCTAAGTACACCAAACATTCTGTCATTAGTAGCCCTTGGCAAAATGGTAAAGGTGATGTTGTTCAAGAGTTTGTGAATGCAGCTAGTGATAAAGGAATTGATGTTGGGATCTATCTTTCACCTTGGGATAGACATGATTCTAGATATGGTCATGATTTGCTTTACAATGAATATTACTTAGGTCAATTGCAAGAGCTTCTTAAAAAATATCAAAATGTGAGGGAAATTTGGTTTGATGGAGCAAAAGATCCAAAGGCGAAAAATGTGTCATACTATTTTTCAGATTGGTTTTCAATGGTGAAGGAGTTGCAAAGTTCTATCAATATTTTCTCAGATGCTGGACCTGATGTTAGATGGGTAGGAAATGAACAAGCGATGGCAGGGGACACTTGTTGGTCTACCATTAATCGAAGTTCTCTTGCAATTGGAAGTCCAGGCATAGAGCAGTACCTGAACACTGGTGATCCAAGAGGAACCGATTGGCTACCAGCAGAATGCGATGTATCAATTCGTCCAGGATGGTTTTGGCATAAATCAGAATCACCAAAGAAACTAAGTGAGCTACTTGATATTTATTACACCTCAGTTGGTAGAAATTGCCTGTTAATTCTCAATGTACCACCTAACACAACTGGTCTTATATCCGAAAACGATGCTCATAGGTTAAAAGAATTTAGAACTGCAATCAATACAATTTTTCATAAGAACGTAGCAGAAGGTTGTTATGTTAAAGTTAGTAGCCAAAGAGGAGGAAAAGAGGGAGGGTTTGGACCAGAAAACATGTTGGATAGTGACCATTTGTGGTCATATTGGGCCCCAAGGGAATATAATAAGGAAAAGGAGGACCATTGGGTTGAAATTTGGGGCAATGATGGAGGTTTAAGGTTTAATGTGATTGGAATACAAGAAGCAATTGGTTTTGGTCAAAGGATCAAGAAGTATGAAATTTATGTGGATAGTAAATTGTTAATCAAAGGGACAACAGTTGGTTACAAGAGGCTTCATAGGCTTGATGGAGATGTTGTGCATGCTCAAGTTGTGAGGATTAGGTTCATAGAAGCTAGAGGAGTTCCTCTTATTTCTTCTATTGGTTTGTATTTTGATCCTTTTTGGCATTCAAGGTTTAATGCGACATGA 1479 0.3834 MCKLYCSFFLFITLFLHLNKPSNSSLEQLPTPPLPILPLPTYSQLKWQQREIIMFLHFGVNTFSDSEWGTGHENPSIFNPTGLNTTQWASVAEEAGISLMILTAKHHDGFCLWPSKYTKHSVISSPWQNGKGDVVQEFVNAASDKGIDVGIYLSPWDRHDSRYGHDLLYNEYYLGQLQELLKKYQNVREIWFDGAKDPKAKNVSYYFSDWFSMVKELQSSINIFSDAGPDVRWVGNEQAMAGDTCWSTINRSSLAIGSPGIEQYLNTGDPRGTDWLPAECDVSIRPGWFWHKSESPKKLSELLDIYYTSVGRNCLLILNVPPNTTGLISENDAHRLKEFRTAINTIFHKNVAEGCYVKVSSQRGGKEGGFGPENMLDSDHLWSYWAPREYNKEKEDHWVEIWGNDGGLRFNVIGIQEAIGFGQRIKKYEIYVDSKLLIKGTTVGYKRLHRLDGDVVHAQVVRIRFIEARGVPLISSIGLYFDPFWHSRFNAT 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g04270 492 FunFam Putative alpha-L-fucosidase 1 33 352 - -
Vivi1g04270 492 Pfam Alpha-L-fucosidase 75 339 IPR000933 GO:0004560|GO:0005975
Vivi1g04270 492 SUPERFAMILY (Trans)glycosidases 33 344 IPR017853 -
Vivi1g04270 492 PANTHER ALPHA-L-FUCOSIDASE 11 487 IPR000933 GO:0004560|GO:0005975
Vivi1g04270 492 SMART alpha_l_fucos 37 381 IPR000933 GO:0004560|GO:0005975
Vivi1g04270 492 Gene3D Glycosidases 35 353 - -
Vivi1g04270 492 Gene3D - 360 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g04270 Vivi-Chr1 90976861 90979598 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g04270 K01206 - gmx:100805382 806.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g04270 1 90976861 90979598 Vivi1g04270 1 90976861 90979598 ECH