Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03995 ATGAAACTCAGACTCAGATCTTTCGAATCCAAAGAAACCCTAAAAATCGAAGTTCCCGATCCATGTTCTCTTCAACAACTCAAATCCACAATTTCCACCATCCTCTCTTCTCCTTCCTCTTCCTCTCTTCATCTTTCCCTCAATCGAAAAGACGAAATCAACCCTCCCTCTCCCACCGATTCCCTCCACTCACTCGGCATCGCCACCGGCGACCTCATCTTCTACACTTTCAACCCCACCGCCTTCTCCTCTCAAACCCTTCCCCACAAACCCGCCCCACAACAACAATCCCCTCCAATTCCCTTGGAAAAGCCCGCAGAAGTGCAAACCCTAGAAATGGTGGATGCGTCCGATGAACCCGCGGAGTTGGTGGAGAAGAACAATTCCGAACCTGATTTCGTGAAAACGATTCTTAAAGAAGCGCATGGCGATGATGTTAGCGATTTCAAGCTATTGGTGTTTGCAGTTCATGCTTTTATTCTCGAATCTGGGTTTGTTCGCGTTGATGGAGTTTCGAGTAAGGGTAAGGGGAAGGAGATTGGTGACGTGTCTTCTTCTTCTTCAATGATATCTTTGAGGTATACACTTCCTGAAATTGTGTCCAAAGGTTTATCTCATGCTGTGAATTTAAAAATTCAAACTTTAGGTAATTTTGTGAATGTTTATGGATCTTTGTTGGATGACGTTGGTGCTAGGGTTCATAGGGTTTATTTAGATAAATTTAGGTTTGCTAAACCTTTAAAATTGATGCTAGCAAATTCTGAACCTAATGGTAGTGCTAGTGTTGGTGTTAGTGTTGATGTTAATGATGGTGGTGACGATGAAGCTTTTGAATTGTGGAAGATAGTGAAAGATAAGCTTGCATTGCCACTTTTGATTGATCTTTGTGATAAAGCTGGATTGGAGCTTCCGCCTTGTTTTATGCGACTTCCCATGGAGCTTAAGCTTTTGATATTTGAGTATCTTTCGGGTGATGATTTGGCTAAAGTGTGTTGCACTTGTTCGGAGATGTCGTACCTTGCGTCGAATGATGAGTTATGGAGGAAAAAGTTTGAAGAGGAGTTTGGAGATAGGATGAATGGTATGAAGTTTTTTAAGAACTTGTTTGCGCATTATCGGGCAATGAAGAAGAAATCAGAACAACCGCCACTACCTTTTCGAAATCCTCGGTATGGTATTATGAGATACTTTCAAAGGAGAAGAGGTCCTCATCCTTTTGGAGTGCCTCCAATTTGGGGTGGGGAGTATGATCTGCAGCCAAATTTTGGTCTGAATCTTCCCCCTACATACACACCGAGGCGAACTTTCTTTCCTCCATGTCATCTGGGAGAATTTTAA 1338 0.4275 MKLRLRSFESKETLKIEVPDPCSLQQLKSTISTILSSPSSSSLHLSLNRKDEINPPSPTDSLHSLGIATGDLIFYTFNPTAFSSQTLPHKPAPQQQSPPIPLEKPAEVQTLEMVDASDEPAELVEKNNSEPDFVKTILKEAHGDDVSDFKLLVFAVHAFILESGFVRVDGVSSKGKGKEIGDVSSSSSMISLRYTLPEIVSKGLSHAVNLKIQTLGNFVNVYGSLLDDVGARVHRVYLDKFRFAKPLKLMLANSEPNGSASVGVSVDVNDGGDDEAFELWKIVKDKLALPLLIDLCDKAGLELPPCFMRLPMELKLLIFEYLSGDDLAKVCCTCSEMSYLASNDELWRKKFEEEFGDRMNGMKFFKNLFAHYRAMKKKSEQPPLPFRNPRYGIMRYFQRRRGPHPFGVPPIWGGEYDLQPNFGLNLPPTYTPRRTFFPPCHLGEF 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03995 445 SMART fbox_2 310 350 IPR001810 GO:0005515
Vivi1g03995 445 Pfam F-box-like 309 349 IPR001810 GO:0005515
Vivi1g03995 445 CDD F-box_AtSKIP22-like 306 351 - -
Vivi1g03995 445 Gene3D - 308 381 - -
Vivi1g03995 445 PANTHER F-BOX PROTEIN SKIP22 1 444 - -
Vivi1g03995 445 SUPERFAMILY F-box domain 304 363 IPR036047 GO:0005515
Vivi1g03995 445 ProSiteProfiles F-box domain profile. 304 350 IPR001810 GO:0005515
Vivi1g03995 445 Gene3D - 130 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03995 Vivi-Chr1 84143640 84145410 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03995 K10293 - gmx:100796338 431.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03995 1 84143640 84145410 Vivi1g03995 1 84143640 84145410 ECH