Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03988 ATGTTGCAAACCCTAGTAGCACCCGCAAGCTTTCGCTTCTCGAATCGAATATCCCTCCGAAGCTTCACCGTTCGTGCATTCACTTCCTCCACCGATTATGGAGATCAGTCTCGTGGTGGCCTCCCTCGATTCTTCTCCGAAACTCTCCCTCCTTCCAAGGGCAATGTTATTCGGGTAAAAGGCGATGAGTTCTGGCACATGACAAAAGTATTGAGGTTGTCCACCAATGCTAGGGTACAGCTCTTCAATGGGAAAGGGGGTCTGGTAGAAGGATGTATACAGAACATTGACCGCACAGGACTTGATTTTGTTGCATTGACTGATCCGAAGATAGTACCTCCACAGAATTCTCAGTTGCATGTATTTTCTGGTTTTAGTACTCTGAAGGGTGGCCGTGCTGACTGGCTTGTAGAGAAATGTACAGAACTTGGAGCCAGTAGTGTTACTCCTCTATTGACTGAACGTTCTCCATCAATCTCAGAAAATCGGGTAGACAGACTGGAACGTGTCATTTTAGCAGCATCTAAACAATGCCAACGACTGCATGAAATGATACTGAAACCTCCCGTAGAGATTGGTGATATTTTGCATCTTATTGCGCAATCAAAACTATCTCTTGTCGCGACAGCAGAAGCAACTCCTGTTCTTAATGCCTTGTTGTCACTGGAAAAGGAAACTAGTGGCTTACTCATAGTCGGACCAGAAGGCGATTTCACCGAGAAAGAATTGAATATGATGATGGAAGCAGGTGCTAAAGCTGTTAGTCTCGGGCCTCACCGTCTTCGAGTTGAAACTGCCGCAATAGCACTTTTGTCTACTGTCATGTTATGGTCCGACTCTCAACAAACTTCAGTCTCTTGA 861 0.4564 MLQTLVAPASFRFSNRISLRSFTVRAFTSSTDYGDQSRGGLPRFFSETLPPSKGNVIRVKGDEFWHMTKVLRLSTNARVQLFNGKGGLVEGCIQNIDRTGLDFVALTDPKIVPPQNSQLHVFSGFSTLKGGRADWLVEKCTELGASSVTPLLTERSPSISENRVDRLERVILAASKQCQRLHEMILKPPVEIGDILHLIAQSKLSLVATAEATPVLNALLSLEKETSGLLIVGPEGDFTEKELNMMMEAGAKAVSLGPHRLRVETAAIALLSTVMLWSDSQQTSVS 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03988 286 CDD RsmE-like 119 272 IPR046886 -
Vivi1g03988 286 Pfam RNA methyltransferase domain 117 274 IPR046886 -
Vivi1g03988 286 Gene3D - 40 285 IPR029026 -
Vivi1g03988 286 SUPERFAMILY alpha/beta knot 117 278 IPR029028 -
Vivi1g03988 286 Pfam RNA methyltransferase PUA domain 60 104 IPR046887 -
Vivi1g03988 286 SUPERFAMILY PUA domain-like 43 102 IPR015947 -
Vivi1g03988 286 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE E 40 284 IPR006700 GO:0006364|GO:0008168
Vivi1g03988 286 FunFam uncharacterized protein LOC106771328 isoform X2 40 285 - -
Vivi1g03988 286 NCBIfam RsmE family RNA methyltransferase 55 275 IPR006700 GO:0006364|GO:0008168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03988 K09761 - gmx:100777253 452.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03988 1 84049631 84052438 Vivi1g03988 1 84049631 84052438 ECH