Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03950 ATGTCCTCTTCTTCTCTCTCAACCCCTTTCATCCACCATTCTTCAACTCTCCGCCATGGAACCAACCCTTTTCCTTTCCCTCACGCCACTTCCACTCCCAAACCCCGATTCTTCAAGCCCTTTTCCGCAAAGTGCTCTCTCGACCACATCCCCAAGCAGTTCAGAGAGGAAAATCTCAAAGATGGATTGATGGACAACTACAAGAATGTTCCCGAGTTTCTATATGGTCTTACTCCATCACAAATGGACATGTTCATGTCTTCAAACAATCCTATCCACCAGATGTCTCAAAGAGTTACAGAGGAAAGCATTTCATCTGCCAAAAGTTATTTGGATCATAGTGGAATGGGTAGAATATCTAGCATGGACATTAATGGCTCTTCAAGGACCAGCATGAGTGTAAGTATGTATAGAGGAGGTGGTAGGGGGGGAAGGCGTAGGAGGGGTCCACCGGATTTGCCTTCAATACTCTTGGATGCTCGAATATGTTATCTGGGTATGCCGATTGTACCAGCTGTGACAGAACTTATTCTGGGTCAACTTATGTGGTTGGATTATGATAACCCTGGGAAACCTGTTTACTTATATATTAATTCATCTGGGAGTCAGAATGAGAAGAATGAGACCGTGGGATCAGAAACGGATGCTTATTCCATAGCTGATGCGCTTTCTTTTGTTAAATCTGATATCTATACCGTGAATTTGGCCTTGGCGCTTGGCCAAGCAGCAATGCTTCTGTCTCTTGGAAAAAAGGGTCATCGTGCTGTCTTGCCACATTCGACCACAAAAATATATCTCCCAAAAGCCCACAGATCAAGTGGTTCTGTCTCAGATATGTGGATTCAGGCAAAAGAGCTGCAGACAACTGCTGACTATTACGTTGAGCTGTTGGCAAAAGGAACAGGGAAGCCAGAGGAAGAAATTGCCAAAGACCTCCAGTGGACTAAATATTTCCAAGCACAGGGTGCCATAGACTACGGAATTGCTGACAAAATAATGAACTCAATGGACGGAGAGGGATATAAGAAGCGGGATCTTAATGAAATGCTTGCTACAAGAGCACTTAAGAGAGGTGGCGGGTACCCTCAAGCTGCTCCTTCGGGACATTAG 1110 0.4486 MSSSSLSTPFIHHSSTLRHGTNPFPFPHATSTPKPRFFKPFSAKCSLDHIPKQFREENLKDGLMDNYKNVPEFLYGLTPSQMDMFMSSNNPIHQMSQRVTEESISSAKSYLDHSGMGRISSMDINGSSRTSMSVSMYRGGGRGGRRRRGPPDLPSILLDARICYLGMPIVPAVTELILGQLMWLDYDNPGKPVYLYINSSGSQNEKNETVGSETDAYSIADALSFVKSDIYTVNLALALGQAAMLLSLGKKGHRAVLPHSTTKIYLPKAHRSSGSVSDMWIQAKELQTTADYYVELLAKGTGKPEEEIAKDLQWTKYFQAQGAIDYGIADKIMNSMDGEGYKKRDLNEMLATRALKRGGGYPQAAPSGH 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03950 369 PRINTS Clp protease catalytic subunit P signature 311 330 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vivi1g03950 369 PRINTS Clp protease catalytic subunit P signature 253 272 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vivi1g03950 369 PRINTS Clp protease catalytic subunit P signature 192 212 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vivi1g03950 369 PRINTS Clp protease catalytic subunit P signature 232 249 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vivi1g03950 369 PRINTS Clp protease catalytic subunit P signature 152 167 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vivi1g03950 369 Pfam Clp protease 155 335 IPR023562 -
Vivi1g03950 369 CDD S14_ClpP_2 152 332 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vivi1g03950 369 SUPERFAMILY ClpP/crotonase 149 337 IPR029045 -
Vivi1g03950 369 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 48 335 IPR023562 -
Vivi1g03950 369 MobiDBLite consensus disorder prediction 122 150 - -
Vivi1g03950 369 Gene3D - 154 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03950 Vivi-Chr1 83310635 83314338 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03950 K01358 - gmx:100820008 486.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03950 1 83310635 83314338 Vivi1g03950 1 83310635 83314338 ECH