Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03908 ATGGGGGAGTTCATGCATATGCACACACTTAATCTTGATTTCAGTTCTTCCCTTACCGGTTTTGAAGAAGACTGTTTTAATTGCATGCCCAATCTAATGTGTCTCTCAATGTGTGAAACAAGGATTTCAAATCTTTGGACAACTGTTGCAGCTCTCTCTAAGCTTCCTTCTTTGGTTGAGCTAAGATTTCAATATTGGCAGTATTGTAATGATGAGGGAACATCTTTTACCTCATCCAGTGGGAAGTCAGATGCCACCGCCGATTTTAGTCTGCTTGATAAAGTTCCTTTTATTGGGGAATCCTGCATTGATACAAGTGAACTAACAGATCTTAACATTAGTGTCGAGGATCCACTTAGAAATTTTTATTCCTTTGATGAAGAAGTTATGAATAATGATGTTCAAAGCATGGTCGAGGACTCGTCAGATGATAGTGAAATTGAATTGACAAATCATCATCATAGAGACTGGTTGGCAGGTGTTTTTCCTAGGTGGAGTTTACAAATGCCTCTTCAAAGTGAGAATGAAGAACAATCGTCAAGAGATTACTTTACAGGGAATAGTGTTGATGTTTCTATGAAGTATATGTCTTGTCATGCATCACCAATATGTCAGGAAAAACATTACAGAGAATTCATAACAGCTTCATTACCGAAGCTTAAAAGTTTAGATAATCTACCGATCAGAAATATTGACAAGGAAAGGGCTACTGGAATATTTTCTCAATACTTTGAATATCTTCCGTACAGATGGAAGAGCAAAGAAAGTGTTTTAAGTATCTTACACAAGCGAGAAATAAAATCAGGCCGCATTAAAGTACAATCTTCTAAGCGTAGCCCATCACATATTTCTGGAACATCTCAACATTTTTATACAAGGTCTCTTTCTGCTGCTAAACTAGGGTCTTCAACTTGGCCTCTCTTACATCCTCTTTCTCTATCAGGATTTGAATTGGATAAGGGATTTCGGCCAAGGCAGTTTGAGTATCACCCATCTGACTCCAGCTTGATGGTGTTTGGAACTTTAGATGGTGAAGTAGTTGTCATCAATCACGAGAGTGAACACATTGTGAGTTATATCCCATCACTTGGCGCGATGAATAGTGTCTTGGGCCTTTGTTGGCTCAAGAAATATCCTTCTAAGCTTATAGCAGGTTCAGATAATGGTTCCCTGAAATTATATGACATCAACCATATACCGAGAAAAATTACTGGCTTATACGGGAACTCTGGTTGTGTTACCTTTGATGAATTTGACCAGCTGACATCTGTTCATGTTAACTCCACAGATGAGTTATTTCTTGCAAGTGGTTACTCAAGAAATGTTGCTTTGTATGACATCAACAGTGGAAAGCGCTTACAAGTATTCACAGATATGCATCGTGGGCATATTAATGTAGTGAAGTTTGCAAATCATTCCCCGTCAATTTTTGCCACTTCATCATTTGATCAGGATGTCAAGATGTGGGACTTGAGACAGAAACCAATTCACCCCTGCTTCACTGCTTCAAGCTCCAGAGGAAATGTGATGGTTTGTTTCTCTCCAGATGACCAATATATACTAGCATCGGCAGTTGACAATGAGGTTAGACAATTTCTGGCTGTTGATGGTAGGCTTCACTTAGTTTTTGATATAGCTCCAACTGAAAGTTCTCAAAATTACACCCGTTCTTATTACATGAATGGGAGGGACTATATCATAAGTGGAAGTTGTGATGAACAAATTGTCCGTATTTGCTGTGCTCAAACAGGGAGGCGCCTGAGAGATATTTCCCTGGAGGGTAAATCCTTAGGAAGTTCCATGTTTGTTCAATCTTTGAGAGGTGATCCTTTCAGGGATTTCAATATGAGTGTGTTGGCAGCTTACATGCGACCAGGCTCCAAGTCTGAAATAGTCAAGATCAACTTACTAGCATCTAGTAGCCATGCTAACGACGACTCTGATGATCATCCTGTATGCCCATCCAACATTATGGGAGCTTGA 1983 0.3944 MGEFMHMHTLNLDFSSSLTGFEEDCFNCMPNLMCLSMCETRISNLWTTVAALSKLPSLVELRFQYWQYCNDEGTSFTSSSGKSDATADFSLLDKVPFIGESCIDTSELTDLNISVEDPLRNFYSFDEEVMNNDVQSMVEDSSDDSEIELTNHHHRDWLAGVFPRWSLQMPLQSENEEQSSRDYFTGNSVDVSMKYMSCHASPICQEKHYREFITASLPKLKSLDNLPIRNIDKERATGIFSQYFEYLPYRWKSKESVLSILHKREIKSGRIKVQSSKRSPSHISGTSQHFYTRSLSAAKLGSSTWPLLHPLSLSGFELDKGFRPRQFEYHPSDSSLMVFGTLDGEVVVINHESEHIVSYIPSLGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDINHIPRKITGLYGNSGCVTFDEFDQLTSVHVNSTDELFLASGYSRNVALYDINSGKRLQVFTDMHRGHINVVKFANHSPSIFATSSFDQDVKMWDLRQKPIHPCFTASSSRGNVMVCFSPDDQYILASAVDNEVRQFLAVDGRLHLVFDIAPTESSQNYTRSYYMNGRDYIISGSCDEQIVRICCAQTGRRLRDISLEGKSLGSSMFVQSLRGDPFRDFNMSVLAAYMRPGSKSEIVKINLLASSSHANDDSDDHPVCPSNIMGA 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03908 660 Gene3D - 321 608 IPR015943 GO:0005515
Vivi1g03908 660 Gene3D Ribonuclease Inhibitor 1 94 IPR032675 -
Vivi1g03908 660 SMART WD40_4 449 490 IPR001680 GO:0005515
Vivi1g03908 660 SMART WD40_4 495 533 IPR001680 GO:0005515
Vivi1g03908 660 SMART WD40_4 408 446 IPR001680 GO:0005515
Vivi1g03908 660 SMART WD40_4 353 395 IPR001680 GO:0005515
Vivi1g03908 660 ProSiteProfiles Trp-Asp (WD) repeats profile. 457 492 IPR001680 GO:0005515
Vivi1g03908 660 PANTHER BNAC09G30780D PROTEIN 1 659 IPR046377 GO:0071493|GO:0080008
Vivi1g03908 660 SUPERFAMILY WD40 repeat-like 323 590 IPR036322 GO:0005515
Vivi1g03908 660 Pfam WD domain, G-beta repeat 461 490 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03908 Vivi-Chr1 82526774 82533978 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03908 376 539 Miscellaneous Gene Families AT5G08390 26.829 3.09e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03908 - - gmx:100806443 1122.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03908 1 82526774 82533978 Vivi1g03908 1 82526774 82533978 ECH