Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03789 ATGCCAAACCTCGTATTCCTCTCCCTAACTATCACCATCTATCTCTCCATCTCCCACACCAATTTCCTTGCACAATCCCTCACTTCACCCTCAGACATTCAAGCTCTCAAAGCCTTCAAAGCCTCAATCAACCCCTCCTCAATCCCACCCTCCTCATGCATAGCCTCATGGAACTTCACCACTGATCCATGCTCTACCCCTCGCCGCATTTACTTTCTCTGCGGATTCACCTGCACCACTGACTCCACACACATCAACCAAATCACACTCGACTCAGCAACCTACTCAGGCACACTCACACCACTCATCTCTCAACTCACCCAGCTCATCACACTAGACCTCTCCGACAACAACTTCTCCGGCTCAATCCCATCTTCAATCTCCTCCCTCTCAAATCTCAAAACCTTAACCCTCCGATCCAACTCCTTCTCCGGTTCAATCCCTCTCTCAATAACCAAACTCAAATCTCTCGAATCTATAGACTTCTCACATAACTCCCTCTCCGGGCCTATCCCAAACTCGATAAATTCCCTCGCAACCATTCGCAGAATCGATTTAAGCTTCAATAAACTAACCGGCTCTATCCCGAAGCTACCTCCGAACTTAGTCGAACTCGCAATCAAGAACAACTCTCTATCCGGGCCACTCCAAAAACCAACCTTTGATCAATCCACTCAACTAGCAGTAGTTGAACTCAGCGAGAATTCACTCACCAGAACAATCGAATCATGGTTGTTACTTCTACCCTCTCTGCAGCAAGTGAATTTAGCCAACAACAGCTTCACGGCGATTCAGATCTCAAAACCAGCACACCCTGGAGGAAGCAACCTTGTAGCATTGAACCTCGGATTCAACAGAATCCAAGGTTACGCGCCCGCGAATCTAGCTGCATATCCTATGCTGTCGTTTTTGTCGATTCGGCATAACTCGTTACGTGGGAACATACCAATGGAATATGGACAGATCAAGTCTATAAAGAAGTTGTTCTTGGACGGGAACTTCCTTGTTGGGAATCCGCCGCCGGGGTTGTTGGCTGCCGGAGCTACGGTTTCCGGTAGCTTGGGGGATAATTGTCTACAGAAGTGTCCAGTTTCTTCGCAAATGTGTACGCCAGCACAGAAACCCAGTTCTGTTTGCAAACGAGCACAACGTGGAAGATCATAG 1164 0.4802 MPNLVFLSLTITIYLSISHTNFLAQSLTSPSDIQALKAFKASINPSSIPPSSCIASWNFTTDPCSTPRRIYFLCGFTCTTDSTHINQITLDSATYSGTLTPLISQLTQLITLDLSDNNFSGSIPSSISSLSNLKTLTLRSNSFSGSIPLSITKLKSLESIDFSHNSLSGPIPNSINSLATIRRIDLSFNKLTGSIPKLPPNLVELAIKNNSLSGPLQKPTFDQSTQLAVVELSENSLTRTIESWLLLLPSLQQVNLANNSFTAIQISKPAHPGGSNLVALNLGFNRIQGYAPANLAAYPMLSFLSIRHNSLRGNIPMEYGQIKSIKKLFLDGNFLVGNPPPGLLAAGATVSGSLGDNCLQKCPVSSQMCTPAQKPSSVCKRAQRGRS 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03789 387 Pfam Leucine rich repeat N-terminal domain 30 65 IPR013210 -
Vivi1g03789 387 Gene3D Ribonuclease Inhibitor 29 198 IPR032675 -
Vivi1g03789 387 Gene3D Ribonuclease Inhibitor 199 370 IPR032675 -
Vivi1g03789 387 FunFam Nuclear pore complex protein NUP107 29 197 - -
Vivi1g03789 387 Pfam Leucine rich repeat 131 191 IPR001611 GO:0005515
Vivi1g03789 387 Pfam Leucine Rich Repeat 109 130 IPR001611 GO:0005515
Vivi1g03789 387 SUPERFAMILY L domain-like 29 340 - -
Vivi1g03789 387 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 9 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03789 Vivi-Chr1 80656160 80657683 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03789 55 383 Receptor kinase-like Gene Family AT5G46330 28.869 4.75e-23 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03789 - - psat:127097922 649.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03789 1 80656160 80657683 Vivi1g03789 1 80656160 80657683 ECH