Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03725 ATGAACAATTCAAGCGGCGAAGAAGAAGCAGCAACAGCATTGTCAAGAGCTGCAAAATCCACTGACGAACTTTACCTTCTCCGAGACACCTATTTCCCCCAAAACCCTAGCGATAGAATCTCCAAATTGCAACAACTTTCCGATCTCATTCTCAATCTCCTCGATTCCGTTCCTCCAGAAGAAAGAAAATCGCCTACGCAACGGGCAGTATTTGAATATCTTAAAGGGAAAGTGTTAGATGTATATCCCGAATATAAGAAAGAGGCTGAGGATCATCTATCAAAAGCAGTTAAGTTGAACCCGTCTTTTGCAGATGCTTGGCTATGTTTAGGAAACTGTATTTGGAAAAAAGGAGATTTATCTGCAGCAAAGAACTGTCTCAATCTTGCATTAAACAAGGGTCCTGACAAAAAGATTCTTTGCCAATTATCAATGCTTAAAAGAAAAATGTCTCAAGGTGCGGATAATCAAGCAGAGCTTGTTGATGAAAGCATTCAACATGCAAAGGAAGCAATTGCTTTGGATGTCAAGGATGGAGACTCTTGGTATAATCTTGGAAATGCATACCTTACGAGTTTTTTTGTCACTGGAGGTTTGGATCATACCAGACTTTCACATTCTTTAAAAGCATATCAAAATGCTGAGAAAGATGAAGGGATCAAGTCCAATCCAGACTTTTACTTTAACAGTGCCACTGCTAACAAATATCTAGAGAACTATGAGAGGGCGCTTAGTGGATTTGAGGCTGCTGCTTTGAAGGATCCAGGTCTCAATGCTGCAGAGGATGTTCAGAAAATTGTCAATATACTTGACAAGGTGGACAATCTTTTAAGGGTACATGTAAGAGCTAAACGAATCGCCACTTTGGCAGCATCATTGGCTGCTGTAAATTTGAAATCGCCCTACAGAACAGTTACCGTAGACCTTCTGTCAGAGGGTCTTAATAGAGCTCTAGCAGTAGATGGGAAGGTATTATTCTATATTAGTAGTGATGGTGTTGCTCCACTATACTATTTGCTCTGTGATTCAAACCGAACTTGCTTTGTTCTCTCAGTTTATGGTGTACGGGAAGATGTGATTAAAGGAGGAGACCAGCTCACATTGCTTGATCCTTGTTTTCGCGACGTTGATGTTACCTGGAAGGAGAAGCATTACCAGTTCAAATCTATACGCGTGGATTTCTATGAGCAAATGCTTGTTAATGGAAAAGCTCTGACTCCTCAACAAGCTATTCATTCATCGATAATCGCACAACATAAACCATGA 1266 0.4044 MNNSSGEEEAATALSRAAKSTDELYLLRDTYFPQNPSDRISKLQQLSDLILNLLDSVPPEERKSPTQRAVFEYLKGKVLDVYPEYKKEAEDHLSKAVKLNPSFADAWLCLGNCIWKKGDLSAAKNCLNLALNKGPDKKILCQLSMLKRKMSQGADNQAELVDESIQHAKEAIALDVKDGDSWYNLGNAYLTSFFVTGGLDHTRLSHSLKAYQNAEKDEGIKSNPDFYFNSATANKYLENYERALSGFEAAALKDPGLNAAEDVQKIVNILDKVDNLLRVHVRAKRIATLAASLAAVNLKSPYRTVTVDLLSEGLNRALAVDGKVLFYISSDGVAPLYYLLCDSNRTCFVLSVYGVREDVIKGGDQLTLLDPCFRDVDVTWKEKHYQFKSIRVDFYEQMLVNGKALTPQQAIHSSIIAQHKP 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03725 421 SUPERFAMILY TPR-like 76 248 IPR011990 GO:0005515
Vivi1g03725 421 Pfam Tetratricopeptide repeat protein 5 OB fold domain 302 411 IPR032076 -
Vivi1g03725 421 Gene3D Tetratricopeptide repeat domain 5 280 IPR011990 GO:0005515
Vivi1g03725 421 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 25 381 - -
Vivi1g03725 421 Gene3D - 281 420 IPR038645 -
Vivi1g03725 421 SMART tpr_5 224 257 IPR019734 GO:0005515
Vivi1g03725 421 SMART tpr_5 69 103 IPR019734 GO:0005515
Vivi1g03725 421 SMART tpr_5 104 137 IPR019734 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03725 K24928 - gmx:100794928 673.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03725 1 79588761 79595447 Vivi1g03725 1 79588761 79595447 ECH