Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03724 ATGGCGGCGTCGCAGTCTTCCTCCGCCGCGGGCAACACCAACATCATGCTCGCCATCTTCGAGAAGAAAACCAATACCGTAGATCTCTACCGTCCCCTCCGCAACTACATCACCTTCCACTACTCCGAACGCGAGGCTCAAAACCTCGAAGACGATCTCCAAACCCTAAAACAACTCCGTTCCGACATCGAACGTCACTCCGATCCTTCTCTCCCCGCACGCCGTGACCTTTTTATAACCTACTTCAAAGCTCTCTGTCAAGTCGAAACGCGGTTCCCGATCTCGCCTGAACCGGAGCACGTCAACGCGCTCACGTTCGTTTGGTTCGATGCTTTCAAATCGAAGCTGAAAGCCTCTCAGCAGAATATTCACCTCGAGAAAGGATCAGTGTTGTTCAATTTGGGCGCGGTTTATAGTCAGATTGGTTTGTCGTTTGATCGGAATACGGTTGATGGACGCAGGCAGGCCTCTCATGCTTTTATGGGTGCTGCTGGCTCGTTTGCCTTTCTTAGAGATAATGCCTCATTGAAAATCTCTGTTGGAAGTTCCACCACCCTTGATTTGTCTGCTGAGTGTGCTGGAATGTTGGAGAAGCTTATGCTTGCTCAGGCTCAGGAGTGTGTCTTTGAAAACACCATTGCAAAAGGAAGCACACCTGGCGTTTGTGCCAAGATCTCTAGGCAGGTTGGGCTGTATTATGAGGAAGCATTGGCTGCACTGAATGTTGCACCTTTAAACCAGCATTTCGATAAGTCTTGGATAATTCATGTGCAGTTGAAAGCAGCTATTTTCTATGCAGAAGCTTGTTATAGGTATGGATTAGAACTGCATGAGAAAGAGGAAATTGCGGAGGAGATATCGCGGCTGAAGAGTGCTGTTAGTGTGCTTACTGAGGCTAAGAAAAACTCTAGGGGTGCTGCAGCGCAGCTTCTTGATGCTATTAACAAGTTAGAGGCTAATATTAACAGGAACCTTGAAAGGGCTGTCAAGGAGAATGATAGAGTTTACTTGATGAGAGTTCCTTCTCATAGTTCATTGGCACCTCTTCCGGCGTTTGCTATGGTGAAATCGATGGTCATGAGTGAGGTTCTGGATGCGAGTAAAGAGAAAATGTTTACAAGTCTTGTTCCTGACAATAGTGCCAAGGCTCTCTCCAGGTACACTGAAATGGTTGATCACATTATAAGAACACAGGCTGAGAAGTTGCAGCAAGCTAGCGAGCTTACCCGAGTTAGGCTTAAGGAGATGGAATTGCCTGATTCTATTCTTGCCTTGGAAGGAAATTTTTCTCTACCAACAAATCTCAAAGAGGATGTCGAGGCTGTGCAGATCAGTGGGGGGCCTGCTGGTTTGGAAGCAGAGTTGCAGCAGCTTAAGGACTTAAGGAGGGTGAATCAAGAACTGTTGGTTCAGACTGAGGAGCTGTTGCAGAAGGAAGCAAGAGAAGATGCTCAATTTAGAAGTCAATTTGGCACCAAATGGACTAGGCCTCAGTCAAGCACTTTGACAAAGAACTTATTGGATAGATTGAATAGGTTTGCAGGTAACTTGAAGCAAGCTGCTGAGAGTGATGCTAGGATCGAGCGTTCAGTTAGAGAACACTCAGCACTCATGGCAATCCTTGATGCCCGTCCCATTGAATCTGCACTTCCAAGCCTAGCAAGGCCAATTATGTCTTTTGATCAAAATGAAGATGCTATTGTAGGGTCTCTCAAACAAAGCTTGAGGCAACTAGAAACACTAGGAGCTCAAAGGGCTGGTCTTGAAGACATGCTAAGGGAGATGAAAAGAAAGGATGATATATTACCGAAGTTGATGACATCCACCGGTTCTTATGAGGATCTTTTTAAAAAGGAGTTAGCAAAATATGACCATATTTGTGAAGATATAGGTCAAAATATTGAGGCACAAGAGCAACTGTTGCTGCAAATTCAGGCTCAAAATGATGAATTTTCAGTTCTCTTCAATCTTGAAGATTACAAAGCTTCACGTGAAAAATCTTACAAGCAGATTGAAGCTGCCATAGCAAAGTTTCGAGAAATAAAGGACAACATCAATGAAGGGTTAAAATTCTATGTTACCCTGCAGGATGCCATCACAAATGTAAAGCAGCAGAGCAATGACTTTGTAATGACGAGGAACATCCAGTGCAGGGAAATGATTGAAGATGTTCAGAGACAAGTAGCTGGTTTGAGTTTCCAGGATAAAAACTCTGGTGGCTTTAACAACAACTACCCTCCAGTGGGAAACCAAAATCAAAGACCAAATACACAAACAGATCCTCGTCACCAAACACCTTATTATCAGCAATCTGAGCAGCCACCAGTTCCTTCCTATGGTCACCCTCCTCCTCCATATGGTTCGTCACACCATCAGCCTCCTCCTCCATACCAAATTCCACCAACAGCAGCTGCCCCATACCCACCTCCTCAAGTCCATCAGCAGCAGCCACCACCAAACCATGATTATGGTCAGCCTGCATATCCCGGATGGCGTGGTCAATACTACAATGCGCACACACACCCACAACAACAACAACCACAACAGCCCGGTTCTGGTCCTCGACCTCCTTATACTATTCCATCTCCATATCCTCCACCTCACCAAGGTGGCTATTATAAACCGCAATAG 2631 0.4557 MAASQSSSAAGNTNIMLAIFEKKTNTVDLYRPLRNYITFHYSEREAQNLEDDLQTLKQLRSDIERHSDPSLPARRDLFITYFKALCQVETRFPISPEPEHVNALTFVWFDAFKSKLKASQQNIHLEKGSVLFNLGAVYSQIGLSFDRNTVDGRRQASHAFMGAAGSFAFLRDNASLKISVGSSTTLDLSAECAGMLEKLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALAALNVAPLNQHFDKSWIIHVQLKAAIFYAEACYRYGLELHEKEEIAEEISRLKSAVSVLTEAKKNSRGAAAQLLDAINKLEANINRNLERAVKENDRVYLMRVPSHSSLAPLPAFAMVKSMVMSEVLDASKEKMFTSLVPDNSAKALSRYTEMVDHIIRTQAEKLQQASELTRVRLKEMELPDSILALEGNFSLPTNLKEDVEAVQISGGPAGLEAELQQLKDLRRVNQELLVQTEELLQKEAREDAQFRSQFGTKWTRPQSSTLTKNLLDRLNRFAGNLKQAAESDARIERSVREHSALMAILDARPIESALPSLARPIMSFDQNEDAIVGSLKQSLRQLETLGAQRAGLEDMLREMKRKDDILPKLMTSTGSYEDLFKKELAKYDHICEDIGQNIEAQEQLLLQIQAQNDEFSVLFNLEDYKASREKSYKQIEAAIAKFREIKDNINEGLKFYVTLQDAITNVKQQSNDFVMTRNIQCREMIEDVQRQVAGLSFQDKNSGGFNNNYPPVGNQNQRPNTQTDPRHQTPYYQQSEQPPVPSYGHPPPPYGSSHHQPPPPYQIPPTAAAPYPPPQVHQQQPPPNHDYGQPAYPGWRGQYYNAHTHPQQQQPQQPGSGPRPPYTIPSPYPPPHQGGYYKPQ 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03724 876 Coils Coil 279 334 - -
Vivi1g03724 876 ProSiteProfiles BRO1 domain profile. 14 409 IPR004328 -
Vivi1g03724 876 MobiDBLite consensus disorder prediction 776 816 - -
Vivi1g03724 876 CDD BRO1_Alix_like_1 16 371 - -
Vivi1g03724 876 CDD V_Alix_like_1 377 713 - -
Vivi1g03724 876 Coils Coil 39 66 - -
Vivi1g03724 876 Gene3D alix/aip1 like domains 12 376 IPR038499 -
Vivi1g03724 876 Gene3D alix/aip1 like domains 423 704 - -
Vivi1g03724 876 SMART BRO1_2 15 399 IPR004328 -
Vivi1g03724 876 Pfam ALIX V-shaped domain binding to HIV 430 715 IPR025304 GO:0005515
Vivi1g03724 876 MobiDBLite consensus disorder prediction 849 876 - -
Vivi1g03724 876 Pfam BRO1-like domain 16 394 IPR004328 -
Vivi1g03724 876 Coils Coil 578 598 - -
Vivi1g03724 876 PANTHER PCD6 INTERACTING PROTEIN-RELATED 15 868 - -
Vivi1g03724 876 MobiDBLite consensus disorder prediction 733 775 - -
Vivi1g03724 876 MobiDBLite consensus disorder prediction 733 876 - -
Vivi1g03724 876 Gene3D alix/aip1 in complex with the ypdl late domain 377 655 - -
Vivi1g03724 876 Coils Coil 451 478 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03724 K12200 - gmx:100795465 1396.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03724 1 79573605 79583502 Vivi1g03724 1 79573605 79583502 ECH