Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03427 ATGGTAATAGTTGCATTATCTTCTTCCGTCTTCTCCTCCTTACCTCCCCACGACCCCACTCCTTCCTCATCCCCCGCCCCTCGTCCGCCCATCCCCATTCCCAAATACCCCCCACCTCGAAAATCCCAACCCCCACCACCACCATCATCAAATCCCGGCCTCAAAAACTACCGCAACTCCAGATACTACAAACCCGTCAAACCCAACACCGTCATCACCTCCACCGGCGACCGCTCCGTAATCATCGGAGAATCCGGCGTCTCCTATCTCCTCCCCGGCGCTCCGTTTGAGTTCCAGTTTAGTTACTCCGAGACTCCCAAAGTGAAACCCTTAGGGATTCGTGAACCGGCTTTCTTACCGTTTGAGCCTCCCACGATGCCGAGGCCGTGGACCGGGAAAGCGCCGTTGAAGAAGTCGAAGAAGAATATTCCGCTGTTTGATTCGTTTAATCCTCCGCCTCCTGGGATGAAAGGTGTTAAGCAAGTTGAAATGCCGGGGCCTTTTCCGCTTGGGAAGTTTCCGGAAGAAGGAATGAGTAGAGAGGAGATACTTGGGGAGCCTCTTAAGAAATGGGAGATTAAAATGCTTGTTAAACCTATGGTTTCGGATAATCGCCAGGTTAATCTCGGAAGGGATGGATTAACGCATAACATGTTGGAGTTGATACATTCGCATTGGAAGCGTCGACGTGTCTGTAAAGTTCGTTGTAAAGGTGTTCCTACTGTTGATATGGATAATGTTTGCCGCCATATTGAGGAGAAAGCAGGGGGGAAAATAATTCATCGAGTTGGTGGCATAGTTTATCTTTTCCGTGGAAGAAATTACAACTATCGTACTCGTCCACAGTATCCAGTGATGCTCTGGAAGCCAGCTGCTCCTGTATATCCAAAACTTATCCAAGATGCTCCAGAAGGATTAACAAAAGCTGAAGCAGATGAATTACGGAAGAAAGGGAAAAGTCTGTTGCCAATATGTAAATTAGCAAAAAATGGAGTATACACAACACTTGTAAAGGATGTCAGAGATGCTTTTGAAGGAAGCCATTTGGTGAAGATTGACTGCAAAGGATTGGATCCTAGTGATTACAAGAAATTAGGTGCCAAGCTGAAGGATTTGGTTCCTTGTGTGCTGTTGTCTTTTGATGATGAACAAGTATTGATTTGGAGGGGCAAAAACTGGAAATCAATGTACCCAGAAGTTCCAATTTTTACTCCTGCTAAAGCTGGCATTACAAGGAATTTGGACAATACAGGCATGGTTGATGATAATCAATCTAAGCATATGGGCAACACGGTCAAGTTAAGCCCAAAAATGTTATCTCTTTGGAAGAGTGCAATTGAGTCAAACAAAGCTTTGTTGCTAGAAGAATTTAATCTTGGCCCTGATGCTCTCTTGGAGAAGGTAGAAGAATTTGAGGGTATTTCACATGCCACAGAGCACTCCCATCCAGCAATTATTTCTTCAAGTGAAGATGCTTTTGAAGGTTCAACTGGATACCTTCAAGCTGATACAGAAGACAACTATTCAAATGAAGAAGGCCTAGATGATGCTGATGATTATGATAACAATAATGATGATGAAGATGATTATGATTACTACAATGATGCCGAAGATGATGAGTTTAATGATATAGTAGTTACATCTGCTCAACCCGGATCGCTACCAATTGATTCGCTTGTTGGTAAGCTCAAACTAAGACAAAAAGAGTAA 1710 0.4409 MVIVALSSSVFSSLPPHDPTPSSSPAPRPPIPIPKYPPPRKSQPPPPPSSNPGLKNYRNSRYYKPVKPNTVITSTGDRSVIIGESGVSYLLPGAPFEFQFSYSETPKVKPLGIREPAFLPFEPPTMPRPWTGKAPLKKSKKNIPLFDSFNPPPPGMKGVKQVEMPGPFPLGKFPEEGMSREEILGEPLKKWEIKMLVKPMVSDNRQVNLGRDGLTHNMLELIHSHWKRRRVCKVRCKGVPTVDMDNVCRHIEEKAGGKIIHRVGGIVYLFRGRNYNYRTRPQYPVMLWKPAAPVYPKLIQDAPEGLTKAEADELRKKGKSLLPICKLAKNGVYTTLVKDVRDAFEGSHLVKIDCKGLDPSDYKKLGAKLKDLVPCVLLSFDDEQVLIWRGKNWKSMYPEVPIFTPAKAGITRNLDNTGMVDDNQSKHMGNTVKLSPKMLSLWKSAIESNKALLLEEFNLGPDALLEKVEEFEGISHATEHSHPAIISSSEDAFEGSTGYLQADTEDNYSNEEGLDDADDYDNNNDDEDDYDYYNDAEDDEFNDIVVTSAQPGSLPIDSLVGKLKLRQKE 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03427 569 SMART CRS1_YhbY_2 306 389 IPR001890 GO:0003723
Vivi1g03427 569 SMART CRS1_YhbY_2 188 271 IPR001890 GO:0003723
Vivi1g03427 569 MobiDBLite consensus disorder prediction 508 534 - -
Vivi1g03427 569 MobiDBLite consensus disorder prediction 1 17 - -
Vivi1g03427 569 Gene3D - 187 283 IPR035920 -
Vivi1g03427 569 MobiDBLite consensus disorder prediction 18 52 - -
Vivi1g03427 569 Pfam CRS1 / YhbY (CRM) domain 306 389 IPR001890 GO:0003723
Vivi1g03427 569 Pfam CRS1 / YhbY (CRM) domain 190 271 IPR001890 GO:0003723
Vivi1g03427 569 FunFam CRS2-associated factor 1, chloroplastic 187 282 - -
Vivi1g03427 569 MobiDBLite consensus disorder prediction 506 534 - -
Vivi1g03427 569 FunFam CRS2-associated factor 1, chloroplastic 305 399 - -
Vivi1g03427 569 ProSiteProfiles CRM domain profile. 186 282 IPR001890 GO:0003723
Vivi1g03427 569 ProSiteProfiles CRM domain profile. 304 400 IPR001890 GO:0003723
Vivi1g03427 569 MobiDBLite consensus disorder prediction 1 70 - -
Vivi1g03427 569 SUPERFAMILY YhbY-like 187 281 IPR035920 -
Vivi1g03427 569 Gene3D - 306 400 IPR035920 -
Vivi1g03427 569 SUPERFAMILY YhbY-like 306 397 IPR035920 -
Vivi1g03427 569 PANTHER CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC 42 559 IPR044599 GO:0000373
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03427 Vivi-Chr1 73616237 73620435 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03427 - - gmx:100801953 783.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03427 1 73616237 73620435 Vivi1g03427 1 73616237 73620435 ECH