Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03236 ATGTACGGGCCCAGGGGGGCAATGTTGGGAAGCGGGGGGGTTTCGGACGGGTACGAGGTTGGCTCAAAGAGACAAAGAATGATGGAATCCAATCCATACTTCGCAGTGAGCAGCGGAGCAGGCAGCTTTCAACCTTATGGATATGCTGGTGGCTTCCAGCCGCTTCCTCCTTTTCCTGTGGTTCGTCTCAGGGGGCTTCCGTTTAACTGCACAGACATTGACATTTTGAAGTTCTTTGCTGGACTGACCATAGTCGATGTGCTGCTGGTCAACAAGAATGGACGATTCTCCGGGGAGGCCTTTGTAGTCTTTGCAGGAGCAATGCAGGTTGAGTTTGCTTTACAGCGGGATCGACAGAACATGGGTCGCCGATACGTGGAAGTCTTCAGGTGTAAGAAGCAAGATTATTACAATGCTGTTGCTGGTGAGATCAGTTACGAAGGAATATACGACAATGATTACCAAGGAAGCCCTCCTCCATCTCGGGTCAAGAGGTTCAGTGATAAAGACCAAATGGAATACACTGAGATATTAAAGATGCGTGGACTTCCATTCAATGTCACGAAATCTCAAATTATTGAGTTTTTTAAAGATTACAAACTGATAGAAGATAGGGTGCACATTGCATGTCGCCCAGATGGTAAAGCTACTGGAGAGGCATATGTAGAGTTTGTTTCGCCAGATGAGGCTAAGAAAGCAATGTTCAAGGATAAAATGACCATTGGATCAAGGTATGTAGAACTGTTTCCTTCTACACCAGATGAAGCTAGACGGGCCGAGTCAAGATCAAGGCAGTAA 798 0.4662 MYGPRGAMLGSGGVSDGYEVGSKRQRMMESNPYFAVSSGAGSFQPYGYAGGFQPLPPFPVVRLRGLPFNCTDIDILKFFAGLTIVDVLLVNKNGRFSGEAFVVFAGAMQVEFALQRDRQNMGRRYVEVFRCKKQDYYNAVAGEISYEGIYDNDYQGSPPPSRVKRFSDKDQMEYTEILKMRGLPFNVTKSQIIEFFKDYKLIEDRVHIACRPDGKATGEAYVEFVSPDEAKKAMFKDKMTIGSRYVELFPSTPDEARRAESRSRQ 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03236 265 Gene3D - 161 265 IPR012677 -
Vivi1g03236 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 176 253 IPR000504 GO:0003723
Vivi1g03236 265 SUPERFAMILY RNA-binding domain, RBD 175 262 IPR035979 GO:0003676
Vivi1g03236 265 SMART rrm1_1 177 249 IPR000504 GO:0003723
Vivi1g03236 265 SMART rrm1_1 60 129 IPR000504 GO:0003723
Vivi1g03236 265 CDD RRM_hnRNPH_ESRPs_RBM12_like 60 129 - -
Vivi1g03236 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 180 246 IPR000504 GO:0003723
Vivi1g03236 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 124 IPR000504 GO:0003723
Vivi1g03236 265 CDD RRM_hnRNPH_ESRPs_RBM12_like 177 249 - -
Vivi1g03236 265 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED 56 257 - -
Vivi1g03236 265 Gene3D - 59 142 IPR012677 -
Vivi1g03236 265 SUPERFAMILY RNA-binding domain, RBD 51 138 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03236 Vivi-Chr1 70321989 70323921 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03236 K12898 - gmx:100816391 497.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03236 1 70321989 70323921 Vivi1g03236 1 70321989 70323921 ECH