Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03206 ATGAGAAGCATTATCAAACTATCTTGCTTGATACTATGTATACTACATTTCTCTCTTGGATCCAAAGGAGAACAATGTGGTAAACAAAGCAATGGAGCGTTTTGCCCAAATGGATTATGTTGCAGCCAATTTGGTTGGTGTGGTGACACTGAGCCTTATTGTGGAACTGGTTGTCAAAGCCGGTGTAAATCTTCTCCGAAACCGACACCGAGTACCGGTGGTGGTGGTGGAGATGTTGGAAGGCTTGTTCCTTCTTATCTTTTTGACCAAATGCTTAAATACAGAAATGATGGACGTTGTCCTGGTCATGGATTTTATTCCTATGATAGTTTCATTGCTGCTGCTAGATCGTTTAATGGATTTGGTACTACAGGTGATGATACTACCCGTAAGAGAGAGCTGGCTGCTTTCCTGGCTCAAACTTCTCATGAAACCACAGGTGGGTGGTCAAGTGCGCCAGACGGGCCATATGCGTGGGGATATTGCTTTGTGAACCAACTGGATAGCCGGGGAGACTTTTGTGCATCTAGAGATTGGCCATGTGCTCCTGGTAAAAGCTACCATGGCAGAGGACCAATTCAACTCACTTACAACTACAATTATGGTCAAGCTGGCAATGCAATTAATGAAGATTTAATAAACAATCCGAATTTAGTGTCCACAAACCCAACTATATCATTCAAAACAGCCATATGGTTTTGGATGACCCCTCAGGGAAACAAGCCTTCAAGCCATGATGTGATTACTGGGAGATGGACTCCATCTAGTGCTGACAGGTCAGCAGGGAGATTCCCCGGATATGGCGTGATCACCAACATAATCAACGGCGGGTATGAATGCGGACACGGACAGAATAATGCAGCCGATGATAGAGTCGGATTTTATAAAAGGTATTGTCAAATCTTGGGAGTGAGTCCTGGTGGTAACTTGGATTGTAATAACCAAAGGTCATTTGCTTAA 960 0.4385 MRSIIKLSCLILCILHFSLGSKGEQCGKQSNGAFCPNGLCCSQFGWCGDTEPYCGTGCQSRCKSSPKPTPSTGGGGGDVGRLVPSYLFDQMLKYRNDGRCPGHGFYSYDSFIAAARSFNGFGTTGDDTTRKRELAAFLAQTSHETTGGWSSAPDGPYAWGYCFVNQLDSRGDFCASRDWPCAPGKSYHGRGPIQLTYNYNYGQAGNAINEDLINNPNLVSTNPTISFKTAIWFWMTPQGNKPSSHDVITGRWTPSSADRSAGRFPGYGVITNIINGGYECGHGQNNAADDRVGFYKRYCQILGVSPGGNLDCNNQRSFA 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03206 319 ProSitePatterns Chitin recognition or binding domain signature. 35 54 IPR018371 GO:0008061
Vivi1g03206 319 PIRSF Endochitinase 1 319 IPR016283 GO:0004568|GO:0005975
Vivi1g03206 319 SMART ChitinBD_3 25 62 IPR001002 GO:0008061
Vivi1g03206 319 Pfam Chitinase class I 83 312 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vivi1g03206 319 ProSitePatterns Chitinases family 19 signature 1. 100 122 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vivi1g03206 319 ProSitePatterns Chitinases family 19 signature 2. 225 235 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vivi1g03206 319 SUPERFAMILY Lysozyme-like 78 318 IPR023346 -
Vivi1g03206 319 Gene3D Endochitinase, domain 2 165 221 - -
Vivi1g03206 319 ProSiteProfiles Chitin-binding type-1 domain profile. 23 64 IPR001002 GO:0008061
Vivi1g03206 319 CDD chitinase_GH19 87 312 - -
Vivi1g03206 319 PRINTS Chitin-binding domain signature 33 41 IPR001002 GO:0008061
Vivi1g03206 319 PRINTS Chitin-binding domain signature 41 48 IPR001002 GO:0008061
Vivi1g03206 319 PRINTS Chitin-binding domain signature 48 55 IPR001002 GO:0008061
Vivi1g03206 319 Gene3D - 87 318 - -
Vivi1g03206 319 FunFam Basic endochitinase 23 64 - -
Vivi1g03206 319 Pfam Chitin recognition protein 25 62 IPR001002 GO:0008061
Vivi1g03206 319 FunFam Endochitinase (Chitinase) 165 221 - -
Vivi1g03206 319 Gene3D - 23 64 IPR036861 GO:0008061
Vivi1g03206 319 SUPERFAMILY Plant lectins/antimicrobial peptides 25 68 IPR036861 GO:0008061
Vivi1g03206 319 CDD ChtBD1_GH19_hevein 24 63 - -
Vivi1g03206 319 PANTHER CHITINASE-RELATED 14 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03206 Vivi-Chr1 69831818 69834923 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03206 24 319 Glycoside Hydrolase AT3G12500 63.423 1.73e-137 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03206 K20547 - tpra:123882427 535.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03206 1 69831818 69834923 Vivi1g03206 1 69831818 69834923 ECH