Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03149 ATGGTGCTCGAGGCGACGATGATCTGTATCGACAACTCTGAATGGATGCGTAACGGTGATTACTCTCCTTCTCGATTTCAAGCCCAATCCGACGCTGTAAGTCTCATTTGCGGTGCTAAAACTCAGTCTAATCCTGAAAATACTGTTGGAGTTCTCACTATGGCGGGGAAAGGCGTTCGGGTTTTGGCTACTCCTACCAGTGATTTGGGTAAAATCTTAGCTTGTATGCATGGTCTAGATATAGGCGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCACAGTTGGCTCTTAAGCATAGGCAGAATAAGAAGCAGCAGCAAAGGATTATTGTCTTTACTGGAAGTCCTGTCAAGCACGAGAGGAAAATGTTGGAGATGATTGGAAGAAAGTTGAAAAAGAATAGTGTAGCACTTGACGTTGTTAACTTTGGTGAAGATGACGAGGGGAAGACAGAGAAGCTTGAAGCACTACTTGCAGCGGTAAACAATAATGATAGTAGCCACATGGTTCATGTTCCACCTGGTCCAAATGCTCTTTCGGATGTACTTATAAGTACACCTATTTTTACTGGTGATGGAGAAGGTGGAAGTGGTTTTGCAGCTGCTGCTGCAGCAGCATCTGCAGGTGGTGCATCTGGATATGATTTTGGTGTTGATCCAAACTTGGACCCTGAATTGGCTCTTGCTCTAAGAGTTTCAATGGAAGAGGAGAGAGCTAGGCAGGAAGCAGCTGCGAAAAAGGCTGCAGAGGATGCTTCCAAACAGGAGAAAGGTGGCGAACAGCAAGGTACTTCCCAGGATGCAACTATGACTGAGCAAACCAGTACTGCAGCTTCTGAAGTTGAGACTAAGACAAATGACATGATGGACGATGAGAATGCTCTACTACAACAGGCCCTTGCAATGTCGATGGATGATCCTGCAGTTAGCCATGATGTAAGAGATGCAGATATGTCTGAAGCAGCTACAGATGACCCTGAGTTGGCTCGAGCTTTCCAATTGTCAGTATCAGACCCCCCCAACGACACAGTGGGTAGATTATTGGCGGACCAGTCCTTTGTTTCTTCTATCCTTGCATCGCTTCCTGGGGTTGACCCAAATGATCCATCTGTCAAAGATTTGCTGGCTTCCATGCAAAATCAGTCTGAGTCTCAGAAGAAGAATGACGAGGGACCAAATGAGGAGGAGAAGAAGTAA 1200 0.4617 MVLEATMICIDNSEWMRNGDYSPSRFQAQSDAVSLICGAKTQSNPENTVGVLTMAGKGVRVLATPTSDLGKILACMHGLDIGGEMNLAAGIQVAQLALKHRQNKKQQQRIIVFTGSPVKHERKMLEMIGRKLKKNSVALDVVNFGEDDEGKTEKLEALLAAVNNNDSSHMVHVPPGPNALSDVLISTPIFTGDGEGGSGFAAAAAAASAGGASGYDFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEDASKQEKGGEQQGTSQDATMTEQTSTAASEVETKTNDMMDDENALLQQALAMSMDDPAVSHDVRDADMSEAATDDPELARAFQLSVSDPPNDTVGRLLADQSFVSSILASLPGVDPNDPSVKDLLASMQNQSESQKKNDEGPNEEEKK 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03149 399 SMART uim 222 241 IPR003903 -
Vivi1g03149 399 SMART uim 324 343 IPR003903 -
Vivi1g03149 399 SMART uim 292 311 IPR003903 -
Vivi1g03149 399 Gene3D von Willebrand factor, type A domain 3 186 IPR036465 -
Vivi1g03149 399 Pfam Ubiquitin interaction motif 324 338 IPR003903 -
Vivi1g03149 399 Pfam Ubiquitin interaction motif 292 307 IPR003903 -
Vivi1g03149 399 Pfam Ubiquitin interaction motif 224 237 IPR003903 -
Vivi1g03149 399 SMART VWA_4 2 175 IPR002035 -
Vivi1g03149 399 SUPERFAMILY vWA-like 4 175 IPR036465 -
Vivi1g03149 399 MobiDBLite consensus disorder prediction 240 258 - -
Vivi1g03149 399 Pfam von Willebrand factor type A domain 6 115 IPR002035 -
Vivi1g03149 399 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 1 389 IPR027040 GO:0006511|GO:0008540
Vivi1g03149 399 ProSiteProfiles VWFA domain profile. 5 189 IPR002035 -
Vivi1g03149 399 MobiDBLite consensus disorder prediction 259 284 - -
Vivi1g03149 399 MobiDBLite consensus disorder prediction 362 399 - -
Vivi1g03149 399 Gene3D - 220 310 - -
Vivi1g03149 399 FunFam 26S proteasome regulatory subunit N10 220 306 - -
Vivi1g03149 399 Coils Coil 232 252 - -
Vivi1g03149 399 CDD VWA_26S_proteasome_subunit 1 188 - -
Vivi1g03149 399 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 222 241 IPR003903 -
Vivi1g03149 399 FunFam 26S proteasome non-ATPase regulatory subunit 4 3 186 - -
Vivi1g03149 399 CDD PSMD4_RAZUL 348 387 - -
Vivi1g03149 399 MobiDBLite consensus disorder prediction 240 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03149 Vivi-Chr1 69075185 69079680 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03149 K03029 - gmx:100814594 655.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03149 1 69075185 69079680 Vivi1g03149 1 69075185 69079680 ECH