Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03065 ATGAGGTATTCACGCTTCCTACAATTTTCACTCTTCCGCAAAACCCTAACTCAAAACCCTAATTTCACATCTCCTCAAATTTCCAGACCCTACATTCTTTCACCAAATCAACACCAATTCAATGGAAAATCCCAATGCGAATCCACCTCCATACGCAATTACAACACCGCATCGCCGGATTCCGAAAAGGTATCAGCGATTGTTGACGAACTCATGGGATTAACGCTGCTGGAAGTGATGGACCTGGTTGATGTGATGAGGGAGAAAAAGGGAATCAATGAGCTTCCGATTATGATGTTGATGGTGCCAGGGATGGGAATCAGAGGCTTGCCGAAGGGTTTGGGTGGAGCGAAAGGTGGTGGCGGAGAGAAAGGAGAGGAGAAGAAGGTTGAGAAGACGGCGTTTGATGTGAAGCTCGATGGTTTTGATGCTGCGTCGAAGATTAAGATTATAAAGGAAGTTAGGACGTTTACTAGTTTGGGTTTGAAGGAAGCTAAGGATTTGGTGGAGAAAGCACCGACTCTTTTGAAGAAAGGTGTGACGAAGGAGGAGGCGGAGAGTATTATTGCTAAGTTGAAGGAAGTTGGAGCAAAAGCTTCAATGGAATAA 609 0.4499 MRYSRFLQFSLFRKTLTQNPNFTSPQISRPYILSPNQHQFNGKSQCESTSIRNYNTASPDSEKVSAIVDELMGLTLLEVMDLVDVMREKKGINELPIMMLMVPGMGIRGLPKGLGGAKGGGGEKGEEKKVEKTAFDVKLDGFDAASKIKIIKEVRTFTSLGLKEAKDLVEKAPTLLKKGVTKEEAESIIAKLKEVGAKASME 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03065 202 CDD Ribosomal_L7_L12 62 201 IPR000206 GO:0003735|GO:0005840|GO:0006412
Vivi1g03065 202 Gene3D - 129 201 IPR014719 -
Vivi1g03065 202 PANTHER 39S RIBOSOMAL PROTEIN L12 43 202 IPR000206 GO:0003735|GO:0005840|GO:0006412
Vivi1g03065 202 Pfam Ribosomal protein L7/L12 dimerisation domain 63 101 IPR008932 GO:0003735|GO:0005840|GO:0006412
Vivi1g03065 202 SUPERFAMILY Ribosomal protein L7/12, oligomerisation (N-terminal) domain 63 137 IPR036235 GO:0003735|GO:0005840|GO:0006412
Vivi1g03065 202 Hamap 50S ribosomal protein L7/L12 [rplL]. 61 202 IPR000206 GO:0003735|GO:0005840|GO:0006412
Vivi1g03065 202 FunFam 50S ribosomal protein L7/L12 131 202 - -
Vivi1g03065 202 Pfam Ribosomal protein L7/L12 C-terminal domain 135 201 IPR013823 GO:0003735|GO:0006412
Vivi1g03065 202 SUPERFAMILY ClpS-like 131 201 IPR014719 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03065 Vivi-Chr1 67621655 67624828 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03065 K02935 - qsa:O6P43_024810 227.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03065 1 67621655 67624828 Vivi1g03065 1 67621655 67624828 ECH