Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g03059 ATGTCTGCACCAGAATCTCCCATGCCAGCTCTTGACAAGGTTGACCGTGTTGGATCATTGAAGAAGAAGCTGAGGGATTCCCTCACAAGGAGGAGTAGGCGAAGCAGTAGCAAGGTTATGTCGGTTGAGATCGAAGATGTCCGTGATGCCGATGATTTGAAAGCCGTTGATGAATTCCGTCAGGCTCTTGTGTTGGATGAACTTCTCCCTGAGAAGCATGATGACTATCATATGTTACTCAGATTCCTGAGGGCAAGGAAATTTGACATTGAGAAATCAAAGCAAATGTGGTCTGATATGCTTCAATGGAGGAAGGAATTTGGTGCCGACACTATTGTTCAGGATTTTGAATTTGAGGAGTTTGAGGAAGTGTTGCAATATTATCCTCATGGACATCATGGAGTCGATAAAGATGGACGGCCGATTTACATTGAGAGGTTGGGTCAAGTTGATGCCACCAAGTTGATGCAAGTCACAACCCTTGATCGATATATCAAATACCATGTCAAGGAATTCGAAAGGACATTTGATCTTAAGTTTGCAGCTTGTTCCATTGCTGCAAAGAAACACATTGATCAAAGCACCACCATTTTGGATGTGCAAGGAGTGGGGCTTAAGAACTTCAACAAACAAGCCAGGGAGCTCATCACGCGCCTTCAGAAGATTGATGGTGACAATTATCCTGAAACCTTGAATCGCATGTTCATCATCAATGCAGGTTCTGGATTCAGAATGTTGTGGAACACGGTTAAATCCTTCCTTGACCCAAAGACCACAGCAAAAATCCATGTTCTTGGCAACAAGTACCAAAGCAAGTTGCTTGAAATGATTGATGCAAGCGAATTGCCAGAGTTTTTAGGAGGTACTTGTACCTGTGCTGATCAAGGAGGCTGCATGCGTTCTGATAAGGGTCCATGGAAGGATGAAGAAGTTTATAGGATGGTTCAGAATGGCGACCACAAATGCTCAAAGAAATGCGAGGCACCTATCGTGGAAGAGAAAACAATTCCTGAGGAAAGCGCGGCTTCCAAAATGGAGGCAGTTTTCACTGCACAATTGTCGTCTGCACAAATGGCTTCTGTCTTTGCCGCGGCCCCTTCTATAAAAGCTTGCAAGTACGAGGATTTCGTCCCTATGGCTGATAAAAATGCTTGGAAGAAGGTGGAAGAAAATAACACATTAGCAGTATCAAAAGTTGGAGTAGAATCATTCGCCATGCCTGAGTCGTACAACATTCACGGAAAAGTGAACTCACAGATTTTCACTGGCGTGATGGCCTTTGTGATGGGAATCGTAACAATGGTGAGGATGACACGAACCATGCCGAAGAAGCTCACAGATGCGAACTTCTACTCCAATTCTGTTTACTCCGGTGATGACAATAAAAACCAAGACCCTAGTGATCAAATGACTAACCCTACCATATCTGCTCAAGAGTTCATGACTGTGATGAAACGTATGGCTGAGTTGGAAAATAAAATGGGTAACATGAACCATAATGCTTCCATGCCACCTGAGAAGGAGGAAATGCTTAACGCTGCGATAAGTCGCGCTGATGCTCTAGAGCAAGAACTCATGGCAACTAAGAAGGCTTTGGAGGACTCACTTTCCAAACAAGAGGAGCTTTCGGCTTACATTGAGAAAAAGAAAAAGAAGAAGAAGTTGTTTGCTTGGTCATGA 1680 0.4381 MSAPESPMPALDKVDRVGSLKKKLRDSLTRRSRRSSSKVMSVEIEDVRDADDLKAVDEFRQALVLDELLPEKHDDYHMLLRFLRARKFDIEKSKQMWSDMLQWRKEFGADTIVQDFEFEEFEEVLQYYPHGHHGVDKDGRPIYIERLGQVDATKLMQVTTLDRYIKYHVKEFERTFDLKFAACSIAAKKHIDQSTTILDVQGVGLKNFNKQARELITRLQKIDGDNYPETLNRMFIINAGSGFRMLWNTVKSFLDPKTTAKIHVLGNKYQSKLLEMIDASELPEFLGGTCTCADQGGCMRSDKGPWKDEEVYRMVQNGDHKCSKKCEAPIVEEKTIPEESAASKMEAVFTAQLSSAQMASVFAAAPSIKACKYEDFVPMADKNAWKKVEENNTLAVSKVGVESFAMPESYNIHGKVNSQIFTGVMAFVMGIVTMVRMTRTMPKKLTDANFYSNSVYSGDDNKNQDPSDQMTNPTISAQEFMTVMKRMAELENKMGNMNHNASMPPEKEEMLNAAISRADALEQELMATKKALEDSLSKQEELSAYIEKKKKKKKLFAWS 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g03059 559 MobiDBLite consensus disorder prediction 15 35 - -
Vivi1g03059 559 Gene3D - 108 319 IPR036865 -
Vivi1g03059 559 SMART sec14_4 120 291 IPR001251 -
Vivi1g03059 559 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 120 294 IPR001251 -
Vivi1g03059 559 Pfam CRAL/TRIO, N-terminal domain 71 99 IPR011074 -
Vivi1g03059 559 SUPERFAMILY CRAL/TRIO domain 119 316 IPR036865 -
Vivi1g03059 559 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 16 550 - -
Vivi1g03059 559 FunFam SEC14 cytosolic factor 108 320 - -
Vivi1g03059 559 Coils Coil 511 542 - -
Vivi1g03059 559 Gene3D - 25 107 - -
Vivi1g03059 559 CDD SEC14 124 289 IPR001251 -
Vivi1g03059 559 PRINTS Cellular retinaldehyde-binding protein signature 78 100 - -
Vivi1g03059 559 PRINTS Cellular retinaldehyde-binding protein signature 247 266 - -
Vivi1g03059 559 PRINTS Cellular retinaldehyde-binding protein signature 280 289 - -
Vivi1g03059 559 SMART CRAL_TRIO_N_2 75 100 IPR011074 -
Vivi1g03059 559 Pfam CRAL/TRIO domain 126 288 IPR001251 -
Vivi1g03059 559 SUPERFAMILY CRAL/TRIO N-terminal domain 50 116 IPR036273 -
Vivi1g03059 559 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g03059 Vivi-Chr1 67568880 67573169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g03059 54 285 Acyl Lipid Metabolism Gene Families AT5G47730 26.971 5.31e-20 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g03059 K26544 - gmx:100791772 840.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g03059 1 67568880 67573169 Vivi1g03059 1 67568880 67573169 ECH